Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2841 ATGGTGTCGGTGAACCCAAACCCTGCGCAAGGCTTCTACTTCTTCGATCCTTCCAATATGGCCCTTCCCGGCGTCAATACTCTTCCGCCGGCGTCGCAGCCTCCGGCAGCTCCCGCTGCCGCATCCGCCGCCGCCGAGGATCCGAATAAGAAGATCCGGAAACCCTACACGATTACCAAGTCCAGGGAGAGCTGGACCGAGCAGGAGCACGACAAGTTTCTAGAAGCTCTCCAATTATTTGATCGGGACTGGAAAAAGATTGAAGCATTTGTTGGTTCAAAAACAGTTATCCAGATACGGAGTCATGCACAAAAGTATTTTCTTAAAGTTCAGAAGAATGGAACAAGTGAACATGTACCTCCTCCTCGGCCAAAGAGAAAAGCTGCTCACCCATACCCTCAAAAAGCTCCTAAAAGTACTCCTACTATATCCCACGTTACAGGGTCATTGCAATCTTCATCTGCTTTCATTGAACCTGCATACATTTATAGCCCAGATTCTTCATCTGTGCTTGGAACTCCAGTTACTAGCATGCCTTTGTCATCTTGGAATTATAATGCTACACCACCACCAGTCAATGTGCCACAAGTGACTAGAGGTTTTGTTTGTCCTGAACTCATAAtgtttgttttacattttttgtttttcaaatatgtACTTTTTACAGTCTATTTTATGATGAATTTAAATATGAGAAAGGTTCTGCTAACTTGGAAAGTTTTGGTTTGTTTGTTAGATGGAATGGGATTGACTGGAGCTGGACAAGCTGTTCCTTTTAATTGTTGCTATAGCAGTAGTAATGAGAGCACCCCTCCAACTTGGCCAAGTAGCAAAAGGATTAATCGGGGTGACCAGGGCAAGCCAATTAAAGTAATGCCAGATTTTGCACAAGTCTACAGCTTCATTGGCAGTGTATTTGATCCAAATTCTACTAATCACCTACATAAACTAAGACAGATGGACCCAATAAATGTGGAAACGGTATTGTTGTTGATGAGAAATCTCTCCATCAATTTAATGAGTCCTGAATTTGAGGATCATAAGAGGCTGCTTTCATCATATGATACCGACACTGAGAAGTCAAAGTTTAATATGTGCAGCAAATCCCTCACTGATAAATCTGAGAGTGCTGTTCTGTCTGCTTAG 1146 0.4215 MVSVNPNPAQGFYFFDPSNMALPGVNTLPPASQPPAAPAAASAAAEDPNKKIRKPYTITKSRESWTEQEHDKFLEALQLFDRDWKKIEAFVGSKTVIQIRSHAQKYFLKVQKNGTSEHVPPPRPKRKAAHPYPQKAPKSTPTISHVTGSLQSSSAFIEPAYIYSPDSSSVLGTPVTSMPLSSWNYNATPPPVNVPQVTRGFVCPELIMFVLHFLFFKYVLFTVYFMMNLNMRKVLLTWKVLVCLLDGMGLTGAGQAVPFNCCYSSSNESTPPTWPSSKRINRGDQGKPIKVMPDFAQVYSFIGSVFDPNSTNHLHKLRQMDPINVETVLLLMRNLSINLMSPEFEDHKRLLSSYDTDTEKSKFNMCSKSLTDKSESAVLSA 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2841 381 SMART sant 61 109 IPR001005 -
Ssu4g2841 381 MobiDBLite consensus disorder prediction 112 145 - -
Ssu4g2841 381 Pfam Myb-like DNA-binding domain 62 107 IPR001005 -
Ssu4g2841 381 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 57 111 IPR017930 -
Ssu4g2841 381 PANTHER SWI/SNF COMPLEX-RELATED 253 376 - -
Ssu4g2841 381 PANTHER SWI/SNF COMPLEX-RELATED 2 206 - -
Ssu4g2841 381 CDD SANT 64 107 IPR001005 -
Ssu4g2841 381 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 60 109 IPR006447 GO:0003677
Ssu4g2841 381 PANTHER MYB TRANSCRIPTION FACTOR 253 376 - -
Ssu4g2841 381 PANTHER MYB TRANSCRIPTION FACTOR 2 206 - -
Ssu4g2841 381 Gene3D - 65 112 - -
Ssu4g2841 381 MobiDBLite consensus disorder prediction 28 51 - -
Ssu4g2841 381 ProSiteProfiles SANT domain profile. 60 113 IPR017884 -
Ssu4g2841 381 ProSiteProfiles Myb-like domain profile. 57 107 IPR001005 -
Ssu4g2841 381 SUPERFAMILY Homeodomain-like 56 112 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2841 Ssu-Chr4 72652137 72657797 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Ssu4g2841 Myb_DNA-binding 3.4e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2841 - - gmx:778090 554.288
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g2841 4 72652137 72657797 Ssu4g2841 4 72652137 72657797 ECH