Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2838 ATGTCAGTATACGACGCGGCGTTCGTGGACACGGAGCTCTCGAAGCGCACCTCCATCTTCGGGCTCCGCCTCTGGGTCGTCATCGGCGTCCTCGTCGGATCCCTCATCGTCATCACCCTCTTCCTCCTCTCCCTCTGCCTCGCCTcccgccgccgccgccaccacAAGCACCCACTCCGCCGCCGCCCCTCCGCCACGCCCGTCGTCTCCAAGGAGATCCTCGAGATCGTCGTCGTCCCCACGCAGCCGGACACCGTCCTCGCCCCGCCGCCCGCCAAGCGCGCCGCCGCGCACTCGAGCGGGGAGAGCCGGGGCGCCGCGAGCGCGTGCGAAACGGCGTCGTCGCTCGGCAGCGGGAGCGTGGGGCCCGAGGTGTCGCATCTCGGGTGGGGGAGGTGGTACACGCTCAGAGAACTCGAGGCCGCCACTAACGGGCTGTGCGACGAAAACGTGATTGGCGAAGGTGGCTACGGAATCGTGTACAGTGGGTTGTTACCTGATGGCACCAAGGTTGCTGTTAAGAACCTTTTGAATAATAAGGGCCAAGCCGAGAGAGAATTTAAAGTAGAGGTAGAAGCAATTGGTCGTGTGCGGCACAAGAATCTTGTTAGGTTGCTTGGATATTGTGTTGAGGGGGCGTacagGATGCTTGTGTATGAATATATTGACAACGGGAATCTGGAACAGTGGCTGCATGGGGATGTTGGACCTGTAAGCCCTGTGACGTGGGATATCCGAATGAACATCATACTGGGCACGGCAAAAGGATTGGCTTATCTTCATGAGGGCCTTGAACCAAAAGTTGTCCACCGAGACGTGAAATCAAGCAACATACTGCTGGATCGCCAATGGAACCCAAAGGTTTCTGATTTTGGGCTTGCTAAGCTTTTGTATGCTGAGCATAGTTATGTCACCACTCGAGTCATGGGAACATTTGGTTATGTTGCACCAGAGTATGCCTGCACTGGAATGCTGACTGAGAAGAGTGATGTGTATAGTTTTGGGATACTTATCATGGAAATAATTACTGGAAGAAGTCCTGTTGATTATAGTAGACCACAAGGAGAGGTTAATTTAATAGAGTGGTTGAAAACTATGGTTGGGAATCGAAAATCCGAGGAAGTAGTTGATCCTAAGCTTGCTGAAAAGCCATCTTCAAAGGCTGTTAAACGGGCTCTGTTGGTTGCTCTTCGATGTGTTGACCCTGAAGCGGCAAAGAGACCTAAAATAGGACATGTGATCCACATGCTCGAGGCTGAGGACCTCTTATTCCGTGATGAACGAAGGACTGGAGGAGAATCTTCCCGTTCCCATCATGATTATCAACTAGAGCATAAGGACTCAAGACTAGACAAAAGGCAGATAGGTGGAGAGATTACTGATCAAAGTGAAGATGATAGTGGTAGATATCACCATCAGCCCACTAGATGGAGATAA 1437 0.5143 MSVYDAAFVDTELSKRTSIFGLRLWVVIGVLVGSLIVITLFLLSLCLASRRRRHHKHPLRRRPSATPVVSKEILEIVVVPTQPDTVLAPPPAKRAAAHSSGESRGAASACETASSLGSGSVGPEVSHLGWGRWYTLRELEAATNGLCDENVIGEGGYGIVYSGLLPDGTKVAVKNLLNNKGQAEREFKVEVEAIGRVRHKNLVRLLGYCVEGAYRMLVYEYIDNGNLEQWLHGDVGPVSPVTWDIRMNIILGTAKGLAYLHEGLEPKVVHRDVKSSNILLDRQWNPKVSDFGLAKLLYAEHSYVTTRVMGTFGYVAPEYACTGMLTEKSDVYSFGILIMEIITGRSPVDYSRPQGEVNLIEWLKTMVGNRKSEEVVDPKLAEKPSSKAVKRALLVALRCVDPEAAKRPKIGHVIHMLEAEDLLFRDERRTGGESSRSHHDYQLEHKDSRLDKRQIGGEITDQSEDDSGRYHHQPTRWR 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2838 478 MobiDBLite consensus disorder prediction 429 478 - -
Ssu4g2838 478 ProSiteProfiles Protein kinase domain profile. 146 423 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu4g2838 478 Gene3D Phosphorylase Kinase; domain 1 127 221 - -
Ssu4g2838 478 ProSitePatterns Protein kinases ATP-binding region signature. 152 174 IPR017441 GO:0005524
Ssu4g2838 478 PANTHER OS01G0323000 PROTEIN 1 469 - -
Ssu4g2838 478 CDD STKc_IRAK 152 418 - -
Ssu4g2838 478 Pfam Protein kinase domain 149 414 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu4g2838 478 PANTHER BRASSINOSTEROID INSENSITIVE 1-ASSOCIATED RECEPTOR KINASE 1 469 - -
Ssu4g2838 478 SUPERFAMILY Protein kinase-like (PK-like) 124 418 IPR011009 -
Ssu4g2838 478 SMART serkin_6 146 424 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu4g2838 478 Gene3D Transferase(Phosphotransferase) domain 1 222 430 - -
Ssu4g2838 478 ProSitePatterns Serine/Threonine protein kinases active-site signature. 268 280 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2838 Ssu-Chr4 72444489 72447375 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g2838 26 418 Trihelix Transcription Factor Family AT5G38560 41.832 1.31e-93 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Ssu4g2838 Pkinase 1.1e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2838 - - gmx:100777348 826.239
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0184 4 2966736 2972523 Ssu4g2838 4 72444489 72447375 PCT
Ssu3g0685 3 16465047 16468691 Ssu4g2838 4 72444489 72447375 PCT