Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2826 ATGGCGTCCGTTAGGTCTTCCTCTGTAAGACGAATAGGAAGCTTAATCAACGGTTCGTTCCACATGGAATTAGTTCAACACTGTCACTATCACCATAGTGTGTTTATGAATCTTGCAAGGTTGCCAAGTGTTTCACTGAGTCATCCTTATTACAAGAGAGAGTTACAGTTTGCTAAGAATCAGTTTAGTAATTTGGCTTCTGAATCCCTGGGAAGTAGTCACCGCTTTGGTATTAGAGCCAATGTCTCGTTTAATCCTAGATTCTCTAGCTATTGTTTTTGGAGTGCCCTTCCTTTTACTTGCACGAACCACATGTTGAATCGCCGAATGTATTCGTCGTCGGTGGGTGACAAAGGAAGTAGAGATGGTGGAACGGAAGTTCCTGCTGGTTCTGGTGCGAGTGACATGAATACCGCTGGTGATTCTGTTGTTGGGGGTGATTGGGCTGAGAGGATTAAGGATACTTGGAAGAGCGTGGTAGAGGCAACATCATATGCTGGGCAAAAGGTGAAGGAAACTTCTGATGATCTCACTCCATATGCTCAGCAGTTGCTTGATTCACATCCGTATCTTAACAATGTGGTTATTCCGGTTGGTGGTACTTTAACTGCTACTATAATAGCTTGGTTCTTGATGCCTAGGATTTTGCGGAAATTTCACAAGTATGCAATGCAAGGTCCCGTTGCTCTATTGGCAGGAAGTATGTCTGGGGAGCCAGTTCCTTATGAGAAAAGCTTTTGGGGTGCTATGGAGGATCCAGTGCGATATTTAGTTACCTTCATGGCATTCTCACAAATTGGTGTAATGGTAGCTCCAACAACTATAACCGCACAATATCTTGCACCTGCTTGGAGGGGGGCTGTGATAGTTTCATTTGTATGGTTTTTGCATAGATGGAAAACAAATGTTTTTGCACGGACATTGTCTGGTCAAAATTTACTTGGACTTGATAGGGAGAAATTGCTTGCTCTAGACAAAATCTCATCTATTGGTCTATTTGTGATTGGTATAATGGCTTTGGCTGAGGCTTGTGGTGTGGCCGTGCAGTCTATTGTGACCGTTGGTGGTATAGGAGGAGTGGCTACTGCTTTCGCTGCCAGGGACATTCTTGGCAACGTGTTCAGTGGTTTATCTATGCAGTTTTCAAAGCCCTTTTCAATTGGAGATACGATAAAAGCTGGCTCGATGGAGGGTCAAGTGGTAGAAATGGGTCTTACTACCACGTCATTGCTCAGTTCGGAGAAGTTCCCAGTCATTGTGccaaactcatttttttctagCCAGGTCATTGTGAACAAGTCCCGTGCCGAATATTGTGCCATTATTACCAAAATTCCACTGCAAACTGAGGATTTAAGTAAAATTCCCCAGATATCAGATGATGTAAAAAACATGCTCAGATCAAATGCGAAGGTTTTCTTGGGAAAAGATGTTCCCTACTGTTTCTTATCCCGTATAGAAAGTTCATATGCAGAATTGACTCTTGGATACAACCTCAAACATATGGTACCTTACCCATCTGAATCCCTGAATTTATCCATATTATGGTTATTTCATACTCAATGA 1566 0.4221 MASVRSSSVRRIGSLINGSFHMELVQHCHYHHSVFMNLARLPSVSLSHPYYKRELQFAKNQFSNLASESLGSSHRFGIRANVSFNPRFSSYCFWSALPFTCTNHMLNRRMYSSSVGDKGSRDGGTEVPAGSGASDMNTAGDSVVGGDWAERIKDTWKSVVEATSYAGQKVKETSDDLTPYAQQLLDSHPYLNNVVIPVGGTLTATIIAWFLMPRILRKFHKYAMQGPVALLAGSMSGEPVPYEKSFWGAMEDPVRYLVTFMAFSQIGVMVAPTTITAQYLAPAWRGAVIVSFVWFLHRWKTNVFARTLSGQNLLGLDREKLLALDKISSIGLFVIGIMALAEACGVAVQSIVTVGGIGGVATAFAARDILGNVFSGLSMQFSKPFSIGDTIKAGSMEGQVVEMGLTTTSLLSSEKFPVIVPNSFFSSQVIVNKSRAEYCAIITKIPLQTEDLSKIPQISDDVKNMLRSNAKVFLGKDVPYCFLSRIESSYAELTLGYNLKHMVPYPSESLNLSILWLFHTQ 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2826 521 Gene3D - 384 432 IPR023408 -
Ssu4g2826 521 SUPERFAMILY Sm-like ribonucleoproteins 368 433 IPR010920 -
Ssu4g2826 521 PANTHER YNAI-RELATED MECHANOSENSITIVE ION CHANNEL 104 502 - -
Ssu4g2826 521 Gene3D - 279 383 - -
Ssu4g2826 521 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 1, MITOCHONDRIAL-RELATED 104 502 - -
Ssu4g2826 521 MobiDBLite consensus disorder prediction 113 140 - -
Ssu4g2826 521 SUPERFAMILY Mechanosensitive channel protein MscS (YggB), transmembrane region 283 367 IPR011014 GO:0016020
Ssu4g2826 521 Pfam Mechanosensitive ion channel 326 505 IPR006685 GO:0016020|GO:0055085
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g2826 96 502 Mechanosensitive Ion Channel Family AT4G00290 62.162 0.0 519
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2826 K22047 - gmx:100789047 866.3