Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2823 atgAAAGTTGAAGTAAAAATCATTTCTAGAGAAGACATTAGGCCTTCTTCCCCCACACCCTCTCACCTGAGAGTCTTCAAGCTTTCCCTTTTGGATCAACTTATTCCATCACCATATGCTCCAATTATCCTATTCTACACCTCACCTAACAGTTACACAACTCACCTTTCTGATGTCCCCGAGAGGCTAGAATTGCTGAAGAAATCCTTATCAGAGACACTGACCCAATTCTACCCACTAGGTGGCAAAATCAAAGAAGACCTGTCCATTGAGTGCAATGATGAAGGTGCTAATTTTGTGCAAGCCCAAGTGAAGTGTCCTCTTGATAAATTTCTAGTCCAGCCTCAGCTGACCTTACTGCACAAGTTTCTTCCCATTGATCTTGTTTCTGAAGGATCAAATTCAGGAACCTATGTGACTAACATTCAGGTAAACATCTTTGAATGTGGGGGAATTGCCATTGGCATGTGCATTTCTCATAGGATCCTAGATGGGGCTGCACTAAGCACCTTCCTGAAAGGGTGGACAGAAAGGGCCAGGGGTTGCAATCAATTAACCCAACCAAACTTCGTAGCATCCTCTCTCTTCCCCACAAATAATCTATGGCTTAGAGACTTATCAATCTGCATGTGGGGTTCCTTTTTAAACAAGGCAAGTGGGTCACAAGGAGGTTTCTGTTTAGAAACTCAGACATAG 696 0.4296 MKVEVKIISREDIRPSSPTPSHLRVFKLSLLDQLIPSPYAPIILFYTSPNSYTTHLSDVPERLELLKKSLSETLTQFYPLGGKIKEDLSIECNDEGANFVQAQVKCPLDKFLVQPQLTLLHKFLPIDLVSEGSNSGTYVTNIQVNIFECGGIAIGMCISHRILDGAALSTFLKGWTERARGCNQLTQPNFVASSLFPTNNLWLRDLSICMWGSFLNKASGSQGGFCLETQT 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2823 231 PANTHER F21J9.9 5 217 - -
Ssu4g2823 231 Gene3D - 1 203 IPR023213 -
Ssu4g2823 231 Pfam Transferase family 4 198 - -
Ssu4g2823 231 PANTHER VINORINE SYNTHASE-LIKE 5 217 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2823 Ssu-Chr4 72084976 72085671 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g2823 3 195 Monolignol Biosynthesis Gene Families AT5G48930 28.934 4.35e-18 80.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2823 - - gmx:100305374 361.688