Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2820 ATGGGTTTTCCGGTGGGCTACGCGGAGGTGTTCTTCCCGAACCCATTCCTGCACACGCTGGCCCTCCTCGGCCTCCTCCGAAACCTCGTCTTCTTCCTCCTCCACTTCCTCGGCCTCTCCGATTTCCTCGAAACCGAGGAGGCGCTGCCGGACCCCGCCTCCGCCGACCCGGCGCGGCCGCCCTCCGTGTCGGCGCTGCTGATCCGGGAGCTCCTGCCGGTGGCGAGATTCGGCGACTCCGAGGCGACCGTGGAACGCGGCTGCGCCTGCGCGGTGTGTCTGTTCGAGTTCTCCGAGGAGGAGGAGATTCGGTGCATGCGGAACTGCAAGCACATTTTCCACCGCGGCTGCGTGGACCGTTGGATCGATCACGATCAGAAAACGTGCCCGCTCTGCAGGACTCCCTTCGTGCCCGATGACATGCTTGATGATTATAATCAACGCCTCTGGGCCGCTTCTGGGGTTAACGAGTTTTACGCCGACTACGCTTCTATCTTCTGA 501 0.6267 MGFPVGYAEVFFPNPFLHTLALLGLLRNLVFFLLHFLGLSDFLETEEALPDPASADPARPPSVSALLIRELLPVARFGDSEATVERGCACAVCLFEFSEEEEIRCMRNCKHIFHRGCVDRWIDHDQKTCPLCRTPFVPDDMLDDYNQRLWAASGVNEFYADYASIF 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2820 166 ProSiteProfiles Zinc finger RING-type profile. 90 133 IPR001841 -
Ssu4g2820 166 SUPERFAMILY RING/U-box 89 140 - -
Ssu4g2820 166 PANTHER BRH1 RING FINGER PROTEIN 1 162 - -
Ssu4g2820 166 PANTHER RING ZINC FINGER PROTEIN-RELATED 1 162 - -
Ssu4g2820 166 Pfam Ring finger domain 89 133 IPR001841 -
Ssu4g2820 166 SMART ring_2 90 132 IPR001841 -
Ssu4g2820 166 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 55 138 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2820 Ssu-Chr4 71800346 71800846 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g2820 1 154 C3H Transcription Factor Family AT1G63840 48.101 3.39e-47 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2820 K16281 - gmx:100790975 267.314