Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2810 ATGCATGAAGTGTTGTGGCCTCTGATCCTTTTTCGATCCCAAATAACGGAAGAGAATGAGAGTGTCACTGGTAGGTTtgattatttaacagaaaaggacAGCTGGAAAATGGGAGGTTGCTGTTGTTCTGCCAGGAAACCTCACCTGCATGGAACACCAGTGTATTACCATTGCCCACCAACTTTAGGACAGCGTGAGTCTTTAACGTCTAATGATGGTACGGCTGCTTCACTCACTACTGGATTGCTGGTAGGCTTGAACCTGGAAACTTCCACTCCTGATACATACCAGCCCCCTCCTGCACCTCTACCTTATGATATAGTCCTGGGAGGTCCAGCATCAACAGATTCTGAATCAGGCAGAGAAACAGTTAGTGGTAGTAGCTTTGGAACATTAATTACATGTGAAGATCTTGAAGAATCTGACTGTAAAGCTAAAGCTAATTCAGAACCTATATCTCCAAGCAAGGCAGAACTGTCAAAATCAAATGAATTTCATGCATTAGTGACAGAAGAAGAGGACGGCTGTCCAATTTGCCTTGAAGaATATGATGATGAGAATCCTAAAACTCTGACAAAATGTGAACACCACTTTCACCTGTCTTGCATTCTTGAGTGGATGGAAAGAAGTGACTCCTGTCCTATATGCGATCAGGAGATGATATTTGACCAGACACTGAACTAG 684 0.4211 MHEVLWPLILFRSQITEENESVTGRFDYLTEKDSWKMGGCCCSARKPHLHGTPVYYHCPPTLGQRESLTSNDGTAASLTTGLLVGLNLETSTPDTYQPPPAPLPYDIVLGGPASTDSESGRETVSGSSFGTLITCEDLEESDCKAKANSEPISPSKAELSKSNEFHALVTEEEDGCPICLEEYDDENPKTLTKCEHHFHLSCILEWMERSDSCPICDQEMIFDQTLN 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2810 227 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 153 223 IPR013083 -
Ssu4g2810 227 Pfam Ring finger domain 176 216 IPR001841 -
Ssu4g2810 227 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 37 227 - -
Ssu4g2810 227 SUPERFAMILY RING/U-box 167 223 - -
Ssu4g2810 227 SMART ring_2 176 216 IPR001841 -
Ssu4g2810 227 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHB1A-RELATED 37 227 - -
Ssu4g2810 227 ProSiteProfiles Zinc finger RING-type profile. 176 217 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2810 Ssu-Chr4 71596448 71599412 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g2810 37 227 C3H Transcription Factor Family AT4G00335 59.686 1.30e-77 230
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2810 - - gmx:100804435 431.409
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g0700 3 16911949 16913652 Ssu4g2810 4 71596448 71599412 PCT