Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2807 ATGGTGATTTCACCGCCAAGGTTTCCTGATTTCGGGTTGGCGAAGCTCATTGGGAGGGACTTTAGCAGGGTGTTGGCGACCATGAGGGGGACTTGGGGGTATGTTGCGCCGGAGTGGATTTCTGGTGTGGCGATTACAACCAAGGCGGATGTTTACAGCTACGGAATGACACTGCTGGAGCTGATTGGCGGGCGCCGGAACGTGGAGACGCCGCCGGATGCGGGAGGTGGAGAGAGTGGCAGCGAGACGGGAGGGAAGTGGTTCTTCCCGCCGTGGGCGGCACAGCGGATAATCGAGGGGAATGTGAGTGAGGTGGTGGATAAGAGGCTTGGGAATGTGTATAACGTTGAGGAGGCTAGGAGGGTTGCCTTGGTGGCGGTTTGGTGCATTCAAGATGATGAGGCAATGAGACCTTCTATGGGTATGGTGGTGAAGATGTTGGAGGGGCTGGTGGAGGTGAGTGTTCCTCCACCGCCCAAGTTGCTTCAAGCGCTGGTTACTGGGGATTCCTTTCATGGGGTCAAGGCTGATTCAGGCAATGGGCTGTCTACTGGTGGAAGCTTATCTGATGGCAACTTGGAAGTGTCAACTGCTGATTCTGAATCTTATACAGGGAATGTTTTTTCCCCATTGGATGTGAATGTCAATGTCAGTGTGAGATAA 663 0.54 MVISPPRFPDFGLAKLIGRDFSRVLATMRGTWGYVAPEWISGVAITTKADVYSYGMTLLELIGGRRNVETPPDAGGGESGSETGGKWFFPPWAAQRIIEGNVSEVVDKRLGNVYNVEEARRVALVAVWCIQDDEAMRPSMGMVVKMLEGLVEVSVPPPPKLLQALVTGDSFHGVKADSGNGLSTGGSLSDGNLEVSTADSESYTGNVFSPLDVNVNVSVR 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2807 220 Pfam Protein kinase domain 9 69 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu4g2807 220 ProSiteProfiles Protein kinase domain profile. 1 151 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu4g2807 220 SUPERFAMILY Protein kinase-like (PK-like) 10 165 IPR011009 -
Ssu4g2807 220 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 9 206 - -
Ssu4g2807 220 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-2 9 206 - -
Ssu4g2807 220 Gene3D Transferase(Phosphotransferase) domain 1 6 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2807 Ssu-Chr4 71579358 71580020 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g2807 10 157 Receptor kinase-like Gene Family AT5G20050 46.667 2.75e-35 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Ssu4g2807 Pkinase 3.4e-11 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2807 - K03327 gmx:100778917 382.489