Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2806 ATGGCAGGGCGGTCGCTGCTCGACGACGTGGTTCGCGTAGAAGATAGTGGCGGCGACATTGTTGGAGGCTCAAACGACGATTCTCGGTGCCGTTTCGAGAAGTTCCTTGCTGAGTTGTTGAGTAAGATCTGTGGGTTTGATTGCGTTTTGCCTTTTCCTCCAATGCTGGGTGATGGGCAGCATGTGGATTTGTATAAGCTGTTTTTGGTGGTGAGAGGGAAAGGTGGATATGACGCCGTTTGCAATGGAAAGTTGTGGGATTCGGTTGGGGTGGAGTCTGGGTTGGGTGTGAGTGTTGGTTCCTCTGTTAAGTTGGTTTACAGTAAGTACTTGAGTGCTTTAGATGCATGGATGAAGAAAGTTGCTGAGAGTAAGGTGTCTCCTGAGTGTGGTTTGGTGGATGATAGGGATAAGTTTGGGAGGCGTTTGATGGAGTTGCAGGCTGAGGTGGAAGGGTTGTTGTCCGGTTGCGCCGAGGACGGGGTTGTAGGAGAGGAGGTCAAGGGTGGACTTGATGACGATGGTGATAAGTTGGATGGGAGGAAGTTGAGTGATGCAAATGGGGTGAAGGGTTTTGGTTTGGAGGGTAATGGGGATGAGGGAGATGGAAATGGAGGATGTCGTGGTTCGGAGATGCCGGACTGTGAGGTGAATGAGTCGGTTATTGGAAATGTGGGTGAGGGAAATGAGGGTAATGGAGATGAAGGAGATGGAAATCGAGGATGTCGTGATTTGGAGGTGCCGGATTGTGGGGTGAATGAGTCGGTTCTTGGAAACTCGGGTGAGGGAAATGACGCAATGGAAGTGGAGGAAGAGTTTGATGGAGGGAAAATGTCTGAAGAGCAGGCGGTGGATGTATCAGAAGGTGCGAACAACAGTGGGGCTGGATTATTGAGTGGAGGTGAGAAATGTGAGGACAATGATGATAAGGGTATGGTATTGGATCcatttggtggtggtggtgatagtgatAGTTCTGGCCGTAAGAGGAAGAGAGAGTCTGTGTTGGATTCATCTGATGGTGATAGTGATAGTTCTGGTCGTAAGAGGAGGGGAGAGTCTATGTTGGATATGCTGACCTGGGTTACAGGCGTTGCGAAGAATCCTTGTGATCCTGAAGTTGGTTCAATACCTGAAAAGTCAAAGTGGAAGTCTTTCAGTAATCAGGAGGTGTGGAAGCAGGTGTTGTTGTTTCGAGAGACCACGTTTCTCAAAAGAGGTTTTGAGCCAAGCAGTGAACAACGTAGTTGGCAGAAACAGAAGATGCATCCTTGCTTGTATGATGATCACCTTGGGACAAACTACAATCTTAGAGAGAGGTTGAAACGTGACAAGAAGCTTTTATTTGGAAAACCTACAGCTGTACGGAGCTCTTCAGATTCATCTGTAGGAACTGAGGATGGAACACCAAGTCCTCATACTGAAGATCGTACTGAGAAACGGTTGCTTGATTCCTCTGATGCAAATTCAGGTCTTGACAGATGTGCCACAGTACGCATCCCTTTGGGGGCAAATCATCAAGCTGAAATACTAGAATGGACCGGCGTGACTTCTGAAAGTGATTCTAAGTGGTTAGGGACCCGAATATGGCCATCAGCAACAGTAAATACCAGACTTCTTATTGAAAGGGACCCCATTGGAAAGGGAAGACAAGATTCGTGTGGCTGCTCAGTACCAGGTTCTGTTGAGTGTGTAAGATTCCACATTGCTGAGAAAAGGGCTAAAGTTAAGCTGGAATTGGGTGCAGCATTTTACGATTGGAATTTTGACAAGGTAGGTGAAGATGTTAGGCACTTGTGGACGGAAGAAGAACAGAAAAAATTTGAGGATGTGGTACGATCAAACCCTCCGTCACCTGAGACATATTTCTGGGACCATATCTTTAGGGCATTTCCTAAGAAGAGCAGGTCAGATTTAGTTAGCTACTACTTCAATGTCTTTATTTTGCAGCGCAGAGGATACCAAAATAGGCATACTCCTGATAACATTGacagtgatgatgatgatgaagaatcTGGACCACTGAGGAATGTTTTTGGACATCATGCACAGAATTCTGGACAACAGACACAGAATTCGCGGGGCTCCATCTTATTAACCCCCAAAAAGCCACAGACAAAGGGAAAATAG 2130 0.4568 MAGRSLLDDVVRVEDSGGDIVGGSNDDSRCRFEKFLAELLSKICGFDCVLPFPPMLGDGQHVDLYKLFLVVRGKGGYDAVCNGKLWDSVGVESGLGVSVGSSVKLVYSKYLSALDAWMKKVAESKVSPECGLVDDRDKFGRRLMELQAEVEGLLSGCAEDGVVGEEVKGGLDDDGDKLDGRKLSDANGVKGFGLEGNGDEGDGNGGCRGSEMPDCEVNESVIGNVGEGNEGNGDEGDGNRGCRDLEVPDCGVNESVLGNSGEGNDAMEVEEEFDGGKMSEEQAVDVSEGANNSGAGLLSGGEKCEDNDDKGMVLDPFGGGGDSDSSGRKRKRESVLDSSDGDSDSSGRKRRGESMLDMLTWVTGVAKNPCDPEVGSIPEKSKWKSFSNQEVWKQVLLFRETTFLKRGFEPSSEQRSWQKQKMHPCLYDDHLGTNYNLRERLKRDKKLLFGKPTAVRSSSDSSVGTEDGTPSPHTEDRTEKRLLDSSDANSGLDRCATVRIPLGANHQAEILEWTGVTSESDSKWLGTRIWPSATVNTRLLIERDPIGKGRQDSCGCSVPGSVECVRFHIAEKRAKVKLELGAAFYDWNFDKVGEDVRHLWTEEEQKKFEDVVRSNPPSPETYFWDHIFRAFPKKSRSDLVSYYFNVFILQRRGYQNRHTPDNIDSDDDDEESGPLRNVFGHHAQNSGQQTQNSRGSILLTPKKPQTKGK 709
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2806 709 MobiDBLite consensus disorder prediction 324 354 - -
Ssu4g2806 709 CDD ARID 31 115 - -
Ssu4g2806 709 SMART ELM2_2 500 551 IPR000949 -
Ssu4g2806 709 SMART ARID_2 26 115 - -
Ssu4g2806 709 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 2 51 707 - -
Ssu4g2806 709 MobiDBLite consensus disorder prediction 679 709 - -
Ssu4g2806 709 Gene3D - 22 128 IPR036431 GO:0003677
Ssu4g2806 709 ProSiteProfiles ARID domain profile. 29 119 IPR001606 GO:0003677
Ssu4g2806 709 MobiDBLite consensus disorder prediction 470 487 - -
Ssu4g2806 709 SUPERFAMILY ARID-like 27 123 IPR036431 GO:0003677
Ssu4g2806 709 MobiDBLite consensus disorder prediction 454 469 - -
Ssu4g2806 709 Pfam Myb-like DNA-binding domain 600 646 IPR001005 -
Ssu4g2806 709 Pfam ARID/BRIGHT DNA binding domain 51 113 IPR001606 GO:0003677
Ssu4g2806 709 CDD SANT 600 647 IPR001005 -
Ssu4g2806 709 SMART sant 596 649 IPR001005 -
Ssu4g2806 709 MobiDBLite consensus disorder prediction 657 709 - -
Ssu4g2806 709 MobiDBLite consensus disorder prediction 452 488 - -
Ssu4g2806 709 MobiDBLite consensus disorder prediction 191 354 - -
Ssu4g2806 709 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 1 51 707 - -
Ssu4g2806 709 SMART bright_3 30 120 IPR001606 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2806 Ssu-Chr4 71549434 71553041 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Ssu4g2806 ARID 2.4e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2806 - - gmx:100779445 943.725
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g0702 3 16986271 16991935 Ssu4g2806 4 71549434 71553041 PCT