Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2796 ATGGCTGTGGTGAGTCTGAGTCCTATGCCTGCAACTCCCCGACGGGTCAATCCTGTGAACACACTTCGTGATATCGGGGTTCCTGGAGTCATGACTAGTAGGAGAGAAATCGTGAATGAGCCTAGTCCAAGTATGGTGAATGACACAATCTATGTTGCTGTGGCAAAATATGTGAAAGATAGCAAATTAAATCTGATATGGGCAATACAGAACTCTGGAGGAAGGAGAATTTGCATCCTTCATGTTCACGTGCCAGCACCTATGATCCCCTTGATGGGTGCTAAATTTCCTGCAAGTGCACTAAAAGAGCAGGAAGTTCAAGCTTACCGCGAAATTGAAAAGCAAGACATGCACAAGACTCTGGATGCCTATCTTTCTATCTGTCAAAGGATGGGGGTGCGGGCAGGGAAAGTACACGTTGAAATGGATTGTATTGAAAAAGGAATTGTAGAACTCATCTCCCAGTATGGCATACAGAAGCTTATAATGGGAGCAGCATCTGACAAGTACCATTTTCGGAGAATGACAGCCCTCAGATCTAAGAAAGCTATATATGTATGTGAACAAGCACCAGCTTCTTGTCATATACAGTTTATCTGCAAGGGGTACCTTATACACACAAGGGATTGCAGTTTGGATCAAGGGAATGTAGAGGTTGCATCTCCTTTGGTGCAGCAAATGGCAAACTCTATAGTTGGGCATTCGCCTAACTTGAGATCCCAATCTGTTGTGCTAGGGGAAAATCATTGGGTAAAGCTAATTAATCCAGTTCAAGAGTTATTTCATAGAGTAAGGACTATCAATGATGGACGTGCCAGGAGCCTTGCATCTGTTTCTTCTTCAGAAGGGTTTCTAACTCCACAGAGCCAGTTCGGTAGAGAAGTAAGTTCTGATCAGTTAGATGGGCAGTCACGGCGGAGTCCTTCAGTTTTCTCAATGTGCTCTGACAGTAGTTCAGTTGAACCAGGATTGACCCCAAATTTGATTAGTGATGGCAGTGAGAATGATGGAGGAATGGATGATGCTCTCTATGATCAACTTGAACAGGCAATGGCTGAGGCTTCAAATGCTAGGTGGGATGCATATCAAGAAACTGTTAAGCGTGGGAAGGCTGAAAAAGATGCCATTGATGCTATACGCAAgGCTAAAGCCACTGAAATCTTGTATAAAGAAGAGCTGAAACTAAGGAAAGAACTAGAGGAAGCAGCAGAGAAAGCAAATGAAGAACTTGATAATATGAAGAGACAGACAGACAAAGTTAATGGGGAACTTCGACTTGCCTTAGATCAGAAATCATCACTAGAAAATCATATTGCATCAACTGAACTTATGATAAAGGAGTTGGAGCAGAAGATTATATCTGTTGAGGACCTTTCACCAAACTACAAGGAAGAACTAGATGATTTGCAAATGCAGCTTGATAATGCATTGGGAGAGGCAGAGGACTTCAGGAGAAAACAAGGGGAGGCCTCAAGCACACCCGTGCTTCAACGCTTCTCAGAATTCTCTTTTCTAGAGATTAAAGAAGCAACAAGTAACTTCAATCCATCCTTGAAGATTGGAGAAGGCGGATATGGAAGTATATTTAAAGGTATCTTGCATCACACTGAGGTGgctataaaaatgttgaatCCCGGCAGCACTCAAGGACCCTTGGAGTTTCAACAGGAGGTTGAAGTATTGAGCAAGTTAAGGCATCCCAATCTTATCACACTTATAGGAGCCTGCCAAGAATCGTGGACTCTTGTCTATGAGTATTTACCCAATGGAAGCCTTGAAGATCGTCTCAACTGCAAGGATAACACACCTCCATTATCATGGCAAACTCGAATTCGCATTGCTGCAGAACTCTGTGCTGctctcatttttcttcattcCAGTAAACCTCACAGCATAGCGCATGGCGACTTAAAACCCGCCAATGTTCTCCTTGATGCAAACCTTGTTAGCAAGCTCAGTGACTTTGGAATATGTCGTATTTTATCTTGTCAAGAGAGTTCTAGTGACAATACTACACAGTTTTGGAGAACTGTTCCAAAGGGAACTTTTGTCTATTTGGATCCTGAATTCCTTACTTCTGGTGAACTTACACCAAAATCAGATGTTTATTCATTTGGAATCATTCTATTGAGATTGATAACTGGGAAACCAGCCCTGGGAATAACAAAGGAAGTGCAATATGCACTAGATGCTGGAAAGTTGAAATCCCTCTTGGATCCTTTGGCTGGAGACTGGCCATTTATGCTAGCTGAACAGTTGGCTCGCTTGGCTTTGAGGTGTTGTGAGATGAATCGAAAGAGCCGGCCAGATCTTTATCCTGATGTTTGGAGGGTACTGGAACCAACGAGGGCTTCTTCTGGAGACACAAACACCTTTCAACTGGGTTCTCAAGGGCTATGCCAACCTCCTCCATATTTTATTTGTCCAATCTTCCAGAAAGTCATGCAAGACCCACGTGTAGCTGCGGATGGTTTTACTTATGAAGCTGAGGCTATACTTGGATGGCTGGAAAGTGGTCATGATACTTCACCAAAGACAAATTCTAAGCTTGCACATCCCAATCTTGTTCCCAACCACGCTCTCCGCCATGCAATCCAGGACTGGCTTCAAAGTCACTGa 2619 0.4284 MAVVSLSPMPATPRRVNPVNTLRDIGVPGVMTSRREIVNEPSPSMVNDTIYVAVAKYVKDSKLNLIWAIQNSGGRRICILHVHVPAPMIPLMGAKFPASALKEQEVQAYREIEKQDMHKTLDAYLSICQRMGVRAGKVHVEMDCIEKGIVELISQYGIQKLIMGAASDKYHFRRMTALRSKKAIYVCEQAPASCHIQFICKGYLIHTRDCSLDQGNVEVASPLVQQMANSIVGHSPNLRSQSVVLGENHWVKLINPVQELFHRVRTINDGRARSLASVSSSEGFLTPQSQFGREVSSDQLDGQSRRSPSVFSMCSDSSSVEPGLTPNLISDGSENDGGMDDALYDQLEQAMAEASNARWDAYQETVKRGKAEKDAIDAIRKAKATEILYKEELKLRKELEEAAEKANEELDNMKRQTDKVNGELRLALDQKSSLENHIASTELMIKELEQKIISVEDLSPNYKEELDDLQMQLDNALGEAEDFRRKQGEASSTPVLQRFSEFSFLEIKEATSNFNPSLKIGEGGYGSIFKGILHHTEVAIKMLNPGSTQGPLEFQQEVEVLSKLRHPNLITLIGACQESWTLVYEYLPNGSLEDRLNCKDNTPPLSWQTRIRIAAELCAALIFLHSSKPHSIAHGDLKPANVLLDANLVSKLSDFGICRILSCQESSSDNTTQFWRTVPKGTFVYLDPEFLTSGELTPKSDVYSFGIILLRLITGKPALGITKEVQYALDAGKLKSLLDPLAGDWPFMLAEQLARLALRCCEMNRKSRPDLYPDVWRVLEPTRASSGDTNTFQLGSQGLCQPPPYFICPIFQKVMQDPRVAADGFTYEAEAILGWLESGHDTSPKTNSKLAHPNLVPNHALRHAIQDWLQSH 872
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2796 872 PANTHER U-BOX KINASE FAMILY PROTEIN 17 335 - -
Ssu4g2796 872 PANTHER U-BOX KINASE FAMILY PROTEIN 336 871 - -
Ssu4g2796 872 SUPERFAMILY RING/U-box 798 871 - -
Ssu4g2796 872 CDD RING-Ubox_WDSUB1_like 806 847 - -
Ssu4g2796 872 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 801 872 IPR013083 -
Ssu4g2796 872 Coils Coil 431 486 - -
Ssu4g2796 872 ProSitePatterns Protein kinases ATP-binding region signature. 520 541 IPR017441 GO:0005524
Ssu4g2796 872 Gene3D Phosphorylase Kinase; domain 1 484 586 - -
Ssu4g2796 872 SMART Ubox_2 805 868 IPR003613 GO:0004842|GO:0016567
Ssu4g2796 872 ProSiteProfiles U-box domain profile. 801 872 IPR003613 GO:0004842|GO:0016567
Ssu4g2796 872 Pfam U-box domain 803 872 IPR003613 GO:0004842|GO:0016567
Ssu4g2796 872 ProSiteProfiles Protein kinase domain profile. 514 783 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu4g2796 872 Pfam Protein kinase domain 518 769 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu4g2796 872 MobiDBLite consensus disorder prediction 284 332 - -
Ssu4g2796 872 Coils Coil 389 423 - -
Ssu4g2796 872 CDD STK_N 49 202 - -
Ssu4g2796 872 Gene3D Transferase(Phosphotransferase) domain 1 587 784 - -
Ssu4g2796 872 MobiDBLite consensus disorder prediction 284 340 - -
Ssu4g2796 872 SMART serkin_6 514 779 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu4g2796 872 PANTHER OS02G0152300 PROTEIN 17 335 - -
Ssu4g2796 872 PANTHER OS02G0152300 PROTEIN 336 871 - -
Ssu4g2796 872 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 65 166 - -
Ssu4g2796 872 Coils Coil 344 364 - -
Ssu4g2796 872 SUPERFAMILY Protein kinase-like (PK-like) 491 771 IPR011009 -
Ssu4g2796 872 ProSitePatterns Serine/Threonine protein kinases active-site signature. 632 644 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2796 Ssu-Chr4 71341790 71347284 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g2796 1 872 U-box Gene Family AT2G45910 53.211 0.0 884
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Ssu4g2796 Pkinase 1.3e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2796 - - gmx:100781596 1364.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g2796 4 71341790 71347284 Ssu4g2796 4 71341790 71347284 ECH
Ssu4g2796 4 71341790 71347284 Ssu3g0717 3 17292360 17298796 ECH