Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2794 ATGGCAAAGAAGTCCCAAAGACGCCCAGTGCGGTATGAGAAAGATAAATCAGGCTGCATGTGGGGTTTTATTAGTATGTTTGATTTTCGCCACAGCCACAACACTAGGAAGATGATTGCAGATAAGAGGCGAAGCAGCAAACATGCTATTGGTGTTGTACATTCTAAGAACAAGTTTGAGATGTTGAGCAACGTGGATGAAGTTTGTCAAGGCAGTTCGGACGGTGGAGAGAGTAAAAGACCAACAGTTGCAACTGCTGCTAATAAGCCTAGTGTGAAGAAACTCATAGAAGAAGAGATGTTCATTGACCAGAATGCAATGAAGGATACAGATAGTGCTCAAATAGAATCAAAGGAATCCAGATTAAGGCGTGAAGTCCTTTTGAAGTTAgattccaaaagaaaaaataaatcttacaaGAAAAACCGTGATAAGGACACCAATGATTTAAATTTGGATACAACCTTGAAATCTGAAATCACACATAATCCTCACTCAAGGAAGCAATCTAAAGATAATCTTGATCTGGATAAGATGATTGAAGAGTTTTGTCATCTAAAAGATGCTTGTTCCATGATGCATGGCAGTGATGGAGAAGTAGAAGTTGATGCACAATCAAACCAGAAGCAACCTATTTCTGAAAATGCAAGAGATGCAATTTGTGAATTTGTGAATCAGATGATATTAAATGGCAAAGATCCGGCGGAAGCCAGAAAATTCCTTTGCTCCCATCAACTTATGGAAGCTCTCCAGCCTATGAGTTCAGATAAGGAATTGTTTCTTTCACTTCTACAAAACCCAAATTCACTTTTATTGAAATGTGTTCAAGAGTTTAAAAAGTCTCGGGGAACAAatcaaaaagaatatagttGTGTCACTAGTTCCAACTTCTCTGAACAAGATCATTGCAGCCTGGAACAGAATAGGGAGATTGTCAACCACAAGAAGCATAACTTTTTCAGAAAAAAGGCGAAGTCTCAATCAAAAAGTTCAACAAATGAAAATGGGAATACTAATTTGTCAAGTACAATTGTTATTCTGAAGCCTGGGCAGATTGGCTTGCAAAATTCTGAAACTGGAAACAACCTTGCTTCATCCCAAGATTCTTATGATTCTGTCAAATACAACGGTCCTTCTGTGAGAAGTAGTTCACATTTTTCTCTTacagagataaaaaataaattaaagcatgCTATGGGAAGGGAGAGACATGGAAACCCCCCTGAAGGGATCTCAAAAAGACACCCTGTTGCTGATTGTCAAAATAAGTGGCCTAGCAGCAAAGCATTTGGTAAAGACAATGTTGGAATGAGATCTCCTAATAAAGATCACTTCTTCATTGAAAAAATTGCAAGACCTACCACTGGTGTCATGAAAGGAGACAAGACTGGTACAACAAAAGATTCTGAGTTGATTGTGGAACATGAAAATGGCACCTATCCAAAACAAAGGGTTTCTAACTTATATATTGAGGCTAAGAAACATCTTTGTGAGATTGTAGGTAATGGAGATGAGAACATAGACTCGTCAAGTAGGCAGATTTCCAGAACCCTTGGGAAAATACTTTCTCTTCCAGAGTACAACTTTTCTCCCCTTGGCAGTCCTGGAAGGGATTGGGAGCATCATTTTGTGACTGCACAGAGAAGATTTTCTACTTCAGATAAAATTTGGGAGGCTAATAAGGATAATGTTTCCTCCAAACAAGGTACCTTTGCTGGTGATGTGGATCAGGAAATGGACAATTCAGAGAAGCAGCCAAGCATTTGTGATGAAAGCTCTACTAATAAAGTAGAAGAAATTAAGTCAGACTCAAATTTTGCAGATGACCTTAATCATGCTGATGAAGCACAAAATTTTTGCCCTGTTAGAGATGAGATAGTTACTGAAGGTGATGTAGAATCTCTAAAAGAGGTGAATGTTTTGGAATCTTCCTCAGAACCAGTTGACCTCAGTGCAGGAAAGGAGGACCAAAACTATGGTATCTCAGAAACTTCTGATAGCGCAAGATGTTCTCAAAGTTCAAAGCAGGCTGTAAAGGAAGAAAACAAACCAACATCTCCACTGTCATCCCCCTCTCACTCTTCCACCACTAAGAAAATTGAAGAGCTAGAAAGTGCTACAGAGGTATCTGGGCGGCCAAGTCCCGTATCTGTTCTTGACACAGCATTCTTAGAGGATGATGTCAACCCTGGCTACTCCAGATTTCAACCTGTTGAAGCACCAGTACGGCCACTGCAATTTGAAGAACAATATTCTTCACCTTTGAATCAAAtcaatagagaaaaatattgttttgggGAAAATGAATTGATATATGATTACATCAAAGCACTCCTGCAAGCCTCTGGATTGACTATAGATCAATTGTTGATGAAATGCATTTCCTCAGACAAGATACTAGATCCTTCCTTGATTGATCAGGTAGAGTTCTTACCAAACCAGCTTTGCCATGATCAGAAGCTCATATATGACTGCATCAATGAAGTTCTCGTGGAGGTTTGTCGGAATTACTTTGGGGTCTCACCTTGCGTGTCATTCGTAAATCCTGGCATAAGGCCTACTCCAAATATGAAGAAGGTCATTGTCAAGGTCTGGGAAGGAGTGTGCTGGCATTTCCTTCCCTTGCCCCCATTGCGTACCTTGGACAAAATTGTTAAGAAAGACATGGGAAAATATGGGGCATGGATGGACCTTAGACTTGAAGCTGAAACAATTGGTTTTGAAATGGGAGAAGCTATCCTTGCAGAACTGATGGAAGACACAATACTAAGCTGTGTGAGCAACTGTCCAGAAAGTGAATGTTCTCAGCTTCAATTTGAATATAAGGACAATGAAAACAGCAAAAATGTGTAA 2853 0.3859 MAKKSQRRPVRYEKDKSGCMWGFISMFDFRHSHNTRKMIADKRRSSKHAIGVVHSKNKFEMLSNVDEVCQGSSDGGESKRPTVATAANKPSVKKLIEEEMFIDQNAMKDTDSAQIESKESRLRREVLLKLDSKRKNKSYKKNRDKDTNDLNLDTTLKSEITHNPHSRKQSKDNLDLDKMIEEFCHLKDACSMMHGSDGEVEVDAQSNQKQPISENARDAICEFVNQMILNGKDPAEARKFLCSHQLMEALQPMSSDKELFLSLLQNPNSLLLKCVQEFKKSRGTNQKEYSCVTSSNFSEQDHCSLEQNREIVNHKKHNFFRKKAKSQSKSSTNENGNTNLSSTIVILKPGQIGLQNSETGNNLASSQDSYDSVKYNGPSVRSSSHFSLTEIKNKLKHAMGRERHGNPPEGISKRHPVADCQNKWPSSKAFGKDNVGMRSPNKDHFFIEKIARPTTGVMKGDKTGTTKDSELIVEHENGTYPKQRVSNLYIEAKKHLCEIVGNGDENIDSSSRQISRTLGKILSLPEYNFSPLGSPGRDWEHHFVTAQRRFSTSDKIWEANKDNVSSKQGTFAGDVDQEMDNSEKQPSICDESSTNKVEEIKSDSNFADDLNHADEAQNFCPVRDEIVTEGDVESLKEVNVLESSSEPVDLSAGKEDQNYGISETSDSARCSQSSKQAVKEENKPTSPLSSPSHSSTTKKIEELESATEVSGRPSPVSVLDTAFLEDDVNPGYSRFQPVEAPVRPLQFEEQYSSPLNQINREKYCFGENELIYDYIKALLQASGLTIDQLLMKCISSDKILDPSLIDQVEFLPNQLCHDQKLIYDCINEVLVEVCRNYFGVSPCVSFVNPGIRPTPNMKKVIVKVWEGVCWHFLPLPPLRTLDKIVKKDMGKYGAWMDLRLEAETIGFEMGEAILAELMEDTILSCVSNCPESECSQLQFEYKDNENSKNV 950
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2794 950 MobiDBLite consensus disorder prediction 320 340 - -
Ssu4g2794 950 Pfam Domain of unknown function (DUF4378) 773 920 IPR025486 -
Ssu4g2794 950 MobiDBLite consensus disorder prediction 564 594 - -
Ssu4g2794 950 MobiDBLite consensus disorder prediction 399 435 - -
Ssu4g2794 950 MobiDBLite consensus disorder prediction 325 340 - -
Ssu4g2794 950 PANTHER ADHESIN-LIKE PROTEIN, PUTATIVE (DUF3741)-RELATED 1 937 - -
Ssu4g2794 950 MobiDBLite consensus disorder prediction 642 714 - -
Ssu4g2794 950 PANTHER (, RELATED) 1 937 - -
Ssu4g2794 950 MobiDBLite consensus disorder prediction 657 696 - -
Ssu4g2794 950 Pfam Protein of unknown function (DUF3741) 225 269 IPR022212 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2794 Ssu-Chr4 71281492 71285449 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g2794 1 908 TRM (TON1 Recruiting Motif) Superfamily AT4G00440 33.478 6.92e-116 373
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2794 - - gmx:102667950 1534.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g2794 4 71281492 71285449 Ssu4g2794 4 71281492 71285449 ECH
Ssu3g0719 3 17344607 17348650 Ssu4g2794 4 71281492 71285449 PCT