Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2786 ATGGCCAACGCCGGGAGTCCCAAGCATGAAAAGATGAACAAGAACCTAGCCGTTGCAGTGAGAAGTATTCAGTGGAGCTATGGAATTTTCTGGGCACCTTCAACCACTCAAGAAAgGGTCCTGGAATGGAGGGATGGCTACTATAATGGAGACATTAAGACGAGAAAGACAGTCCAAACCATGGAATTGGAAATGAAGGCTGATAAAATAGGCCTTCAGAGGAGTGAGCAACTGAAGGAACTTTACAAGTTCCTTCTTGCAGGTGAGGCTGACCCACAGACTAAAAGACCTTCCGCTGCGTTATCTCCAGAGGACCTCTCAGATTTGGAGTGGTATTACTTGGTCTGCATGTCTTTTGTTTTCAATCACAACCAAAGTTTGCCTGGCAGAGCACTGGAAATTGGTGACACAGTCTGGTTATGCAATGCTCAACATGCGGATAGTAAAATCTTTTCCCGTTCTTTGCTAGCAAAGAGTGCGTCAATTCAGACCGTGGTGTGTTTTCCCTACCGGGGAGGCGTTATTGAGCTAGGCACAACTGAACTGGTTGTTGAGGACCCTAATCTCATTCAACATGTCAAGGCTTGCTTCTTAGAAATCTCAAAGCCTACATGCTCTGATAAATCTTCCTCTATCCTTGATAAACCAAATGATGACAAATATCCAACATGCACCAAGGGTGACCACAGGATGTTAGATACATTGGCTTTGGAGAACCCATGTTCCCCTGCAGAAGAAATCAAATTTGATCAGGATCCTATCAATGAATTACAAGCTGATAACAATGAAGATTCTAACATGGATTTTCCTGATGGTTATGAGCCCCCTTACCATATGGATGAATCCATGATTGAGGGTATCAATGGTGTGTCCTCTCAAGTTCATTTTGTGAATGATGCCTTAGTCATTGGTGCTCCAGATTCCCTGAGTTCCTGTGATTGTATGTCTGAAGCTTCTGAGAACCAGGGCAAGGATTCCAAGAATGCAGGCCAAACTCAACTGATGGAACTTCAAGATTGGTGTCATCCAAAGAGATGCTCCTTGGATGTTGGAGCTGATGAAGACTTGTGCTACATAAGAACACTTTGTGCTATTTTGGGGAATTCATCAACATTTAAACCAAACCCATATGCTGGTAACTCAAATCGCAAATCTAGTTTTGCAAAATGGAAGAAAGGAAGAGTTTCTGAAAGGAAGAGGCCAAAGTTGCACCAAAGCATGTTAAAGAAGACTTTGTTTAAGGTCCCTTTTATGCACAGAAGTTGCTTTTCTCTCAAGTCACAAAAAGAGAAGGACAGAATGGAATGGACTAGTAAATTGGAAAATGCTGATGGTTTCATGGGGAATGCCTTCTctgataagaaaagagaaaataaaagctttCAGGTTGTCAAATCTTTGGTTCCATCTTCTATAAGTGAGGCGGAGAAGATTTCAATTCTTGGGGACACAATTAAGTACTTGAAAAAGCTTGAGACAAGAGTGGAAGAGCTAGAATCTTACATGGAAGTTGCAGATCCTGAAGCAAGAACCAAAAGAATATGCCCTGATGTTCTAGAGCAGATGTCAGATAACTATGGCCCCAGAAAGATTTGCATGGGAATGAAACCTTGGATAAACAAGAGGAAGGGTTGTGGTATTGATGAGATAGACACAGAGCTAGAAAGAATTGTTTCTGAAGAAGCAAAGGCATTGGATGTGAAAGTCAATGTGAAGGAGCAGGAGGTTCTGATTGAGATGAAATGTCCTTACAGGGAATACATACTGTATGATATCATGGATACCATTAACAGCCTACATTTAGATGCCCACACCGTTGAATCATCAACAAGTGACGATGGTGTTCTCACATTAACACTTAAATCTAAGTTTCGAGGAGCAGCAACAGCACCAATGAGGATGATCAAAGAAGCACTCTGCAAAGTATCTGGAAGTATTTGA 1941 0.4142 MANAGSPKHEKMNKNLAVAVRSIQWSYGIFWAPSTTQERVLEWRDGYYNGDIKTRKTVQTMELEMKADKIGLQRSEQLKELYKFLLAGEADPQTKRPSAALSPEDLSDLEWYYLVCMSFVFNHNQSLPGRALEIGDTVWLCNAQHADSKIFSRSLLAKSASIQTVVCFPYRGGVIELGTTELVVEDPNLIQHVKACFLEISKPTCSDKSSSILDKPNDDKYPTCTKGDHRMLDTLALENPCSPAEEIKFDQDPINELQADNNEDSNMDFPDGYEPPYHMDESMIEGINGVSSQVHFVNDALVIGAPDSLSSCDCMSEASENQGKDSKNAGQTQLMELQDWCHPKRCSLDVGADEDLCYIRTLCAILGNSSTFKPNPYAGNSNRKSSFAKWKKGRVSERKRPKLHQSMLKKTLFKVPFMHRSCFSLKSQKEKDRMEWTSKLENADGFMGNAFSDKKRENKSFQVVKSLVPSSISEAEKISILGDTIKYLKKLETRVEELESYMEVADPEARTKRICPDVLEQMSDNYGPRKICMGMKPWINKRKGCGIDEIDTELERIVSEEAKALDVKVNVKEQEVLIEMKCPYREYILYDIMDTINSLHLDAHTVESSTSDDGVLTLTLKSKFRGAATAPMRMIKEALCKVSGSI 646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2786 646 PANTHER TRANSCRIPTION FACTOR TT8 9 644 - -
Ssu4g2786 646 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 455 506 IPR036638 GO:0046983
Ssu4g2786 646 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 13 197 IPR025610 -
Ssu4g2786 646 PANTHER TRANSCRIPTION FACTOR MYC1 9 644 - -
Ssu4g2786 646 Gene3D - 454 522 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2786 Ssu-Chr4 70930767 70988636 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g2786 10 643 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G63650 40.062 1.35e-126 385
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2786 - - gmx:100783746 1129.01
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g2786 4 70930767 70988636 Ssu4g2786 4 70930767 70988636 ECH