Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2776 ATGGGTATTCATTGCTCCAGACTCATCCCATGTTGTGTGGATTCACAAGTTAAGGCATCTGTTATTGAAACTCCAGATGCTGAAATTGAGGATAGTAGTGAGGTCAGTAACTGGCCTACATTCCGTGAATTTACTCTTGAGCAACTTAAGAACGCAACATCTGGTTTTGCTGTTGAGAACATTGTATCTGAACATGGAGAGAAGGCTCCAAATGTTGTTTATAAAGGAAAGCTGGAGAATCAAATGAGGATTGCTGTTAAGCGGTTTAATAGAAATGCTTGGCCTGATGCTCGACAGTTTATGGAGGAAGCAAGATCAGTTGGTCAGCTTCGTAACCAAAGATTGGCAAATTTGCTTGGTTGTTGTTGTGAAGGAGATGAGAGGTTGCTTGTGGCAGAATATATGCCCAATGAAACACTTGCAAAGCACCTTTTCCATTGGGAAACACAACCTATGAAATGGGCAATGCGACTAAGAGTTGTTCTACATCTTGCACAAGCTCTAGAGTACTGCACAAGCAAAGGGCGTGCTCTCTATCATGACCTTAATGCATATAGAGTTCTATTTGATGAGGATGGTAATCCTAGGCTTTCGAGTTTTGGTCTTATGAAAAATAGCAGGGATGGGAAAAGTTATAGCACAAATCTGGCATTTACACCTCCAGAATATCTCAGAACTGGGAGAGTAACATCAGAAAGTGTAATATATAGCTTTGGCACTCTTTTGCTTGACCTTCTTAGTGGGAAGCATATCCCCCCAAGTCATGCCCTCGATGTGATTCGCGGCAGAAATCTTCAGATGCTGATAGATTCTTGTTTGGAAGGACAATTTTCAGATGATGATGGAACTGAGTTGGTACGCTTGGCATCTCGATGTTTACAGTATGAACCTAGAGAACGGCCTAATCCAAAATCACTGGTAGCTGCTTTGGCTCCTCTTCAGAAGGAAACAGAGGTTCCTTCACATATCTTGATGGGCATCCAGCATAGTACTACTTTTGCTTCACTATCTCCACTTGGTCAAGCATGCTCAAGAAAGGACTTGACTGCCATACATGAAGTTCTGGAAAATATTGGCTATAAAGATGATGAAGGAGTGGCAAATGAGTTATCATTTCAGATGTGGACTGATCAAATGCAGGAATAA 1146 0.4162 MGIHCSRLIPCCVDSQVKASVIETPDAEIEDSSEVSNWPTFREFTLEQLKNATSGFAVENIVSEHGEKAPNVVYKGKLENQMRIAVKRFNRNAWPDARQFMEEARSVGQLRNQRLANLLGCCCEGDERLLVAEYMPNETLAKHLFHWETQPMKWAMRLRVVLHLAQALEYCTSKGRALYHDLNAYRVLFDEDGNPRLSSFGLMKNSRDGKSYSTNLAFTPPEYLRTGRVTSESVIYSFGTLLLDLLSGKHIPPSHALDVIRGRNLQMLIDSCLEGQFSDDDGTELVRLASRCLQYEPRERPNPKSLVAALAPLQKETEVPSHILMGIQHSTTFASLSPLGQACSRKDLTAIHEVLENIGYKDDEGVANELSFQMWTDQMQE 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2776 381 SUPERFAMILY Protein kinase-like (PK-like) 34 318 IPR011009 -
Ssu4g2776 381 PANTHER LRR RECEPTOR-LIKE KINASE 1 381 - -
Ssu4g2776 381 Pfam Protein tyrosine and serine/threonine kinase 72 309 IPR001245 GO:0004672|GO:0006468
Ssu4g2776 381 Gene3D Transferase(Phosphotransferase) domain 1 136 328 - -
Ssu4g2776 381 PANTHER SERINE/THREONINE-PROTEIN KINASE BSK5 1 381 IPR045845 GO:0004672|GO:0009742
Ssu4g2776 381 Gene3D Phosphorylase Kinase; domain 1 30 134 - -
Ssu4g2776 381 ProSiteProfiles Protein kinase domain profile. 59 325 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2776 Ssu-Chr4 70835978 70841431 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g2776 30 313 Glycoside Hydrolase AT3G07070 33.654 9.26e-45 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XII-1 Ssu4g2776 PK_Tyr_Ser-Thr 2.6e-29 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2776 K14500 - gmx:100781311 753.051