Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2774 ATGGATCGAGGGAACCAAATGACATTACCTGGCTCTGCATCTTACTATATGCAGAGAGGAATACCTGGTGCTGGAACTCAAACTGAACTGCACAGTTCACCTaatattcgtcctttgtctaATCCCAACCTACCATTTCAATCAAGCATTGGTACCATTGGATCCACATTACCATTAGAGTCTTCGGGAATTTCATCTCCATGTGTCAATGTGAGTGCTCCTTCTGGGGCTGTGCCTGGGGAAACTGGCAAAAGGAAGAGAGGAAGGCCTAGAAAATATGGGCCCGATGGAGCCGTGTCGTTGGCGTTGACTCCAACACCGGCTAGTCATCCCGGAGCCTTGACACAAGGCCAGAAACGGGGTAGAGGGCGCCCGCCTGGGTCTGGGAAGAAACAGCAGTTGGCTTCTCTTGGTGAATTGATGTCGGGTTCAGCTGGGATGGGTTTCACTCCTCATATCATCACCGTTGCAGTTGGAGAAGACATTGCAACAAAAATCATGGCATTTTCTCAGCAGGGGCCTAGAGCTGTATGTATTTTGTCAGCCAATGGTGCTGTCTCTACTGTGACACTTCGCCAGCCTTCAACATCAGGTGGCACTGTCACATATGAGGGGCGTTTTGAGATATTGTGCCTGTCAGGCTCTTACTTGGTTGCCGATAGTGGTGGCACCCGCAACCGAACTGGTGGATTAAGTGTGTCCCTTGCAAGTCCTGATGGTCGTGTCATCGGTGGTGGTGTTGGTGGAGTGCTTATTGCCGCAAGTCCAGTTCAGGTGATACTTGGGAGCTTTATTTGGGGTGGATCAAAGACAAAGatcaagaaaaaagagagttCAGAAGGTGCAGAAGTTGCTATAGAGTCAGATCATCAGACAGTTCATAATCCAGTTGCAGTGAATAGCATTCCCCCAAATCAAAATCTTACTCCAGCCTCATCTTTAAGTCCTTGGCCTGTGTCGCGACCATTGGATATGCGCAATTCCCATATCGACATTGATTTAATGCGTGGGTGA 1014 0.4744 MDRGNQMTLPGSASYYMQRGIPGAGTQTELHSSPNIRPLSNPNLPFQSSIGTIGSTLPLESSGISSPCVNVSAPSGAVPGETGKRKRGRPRKYGPDGAVSLALTPTPASHPGALTQGQKRGRGRPPGSGKKQQLASLGELMSGSAGMGFTPHIITVAVGEDIATKIMAFSQQGPRAVCILSANGAVSTVTLRQPSTSGGTVTYEGRFEILCLSGSYLVADSGGTRNRTGGLSVSLASPDGRVIGGGVGGVLIAASPVQVILGSFIWGGSKTKIKKKESSEGAEVAIESDHQTVHNPVAVNSIPPNQNLTPASSLSPWPVSRPLDMRNSHIDIDLMRG 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2774 337 MobiDBLite consensus disorder prediction 25 43 - -
Ssu4g2774 337 SMART AT_hook_2 84 96 IPR017956 GO:0003677
Ssu4g2774 337 SMART AT_hook_2 119 131 IPR017956 GO:0003677
Ssu4g2774 337 MobiDBLite consensus disorder prediction 61 134 - -
Ssu4g2774 337 Pfam Plants and Prokaryotes Conserved (PCC) domain 151 264 IPR005175 -
Ssu4g2774 337 Gene3D - 151 293 - -
Ssu4g2774 337 ProSiteProfiles PPC domain profile profile. 145 287 IPR005175 -
Ssu4g2774 337 CDD DUF296 150 264 IPR005175 -
Ssu4g2774 337 SUPERFAMILY AF0104/ALDC/Ptd012-like 149 266 - -
Ssu4g2774 337 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 31 312 IPR039605 GO:0003680
Ssu4g2774 337 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 31 312 - -
Ssu4g2774 337 MobiDBLite consensus disorder prediction 18 43 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2774 Ssu-Chr4 70780695 70788586 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g2774 1 337 AT-hook Motif Nuclear Localized (AHL) Family AT3G61310 50.278 2.42e-89 270
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2774 - - gmx:100799791 581.252
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g2774 4 70780695 70788586 Ssu4g2774 4 70780695 70788586 ECH
Ssu3g0749 3 18091865 18097097 Ssu4g2774 4 70780695 70788586 PCT