Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2762 ATgatgaacaacaacaacaacaacaacaatagagaTAGAGCGAGGTACCCTCCCGGGATGGGGCTCGGGCGAGGAGGTTTCAATCCGAACCTGAACCTGAACCAGAACCAGAGCCCGAACCTGATCCAGAACCCGAACCTGAATCATGCGTTTCAGGCTCGGCCACCGTACCAGCAACAGCCGCAGTATGTGCAGAGGCATTTGGTGCAGCCGCCGccgcagcagcagcagcagtgGCTGAGAAGGGACGCCAACGCCGTCGATGAGGTCGAGAAGACCGTGCAGTCTGAAGCCGTGGATTCGAGTTCACAAGATTGGAAAGCAAGACTAAAGATTCCACCAGCTGACACACGGTACAAGACAGAGGATGTAACAGCAACTAAAGGAAATGAATTTGAGGATTACTTTTTGAAGCGTGAGCTGCTCATGGGAATATATGAGAAGGGTTTTGAAAGGCCTTCTCCCATTCAAGAAGAAAGCATTCCTATTGCTCTTACTGGTAGTGACATTCTTGCTAGGGCTAAAAATGGAACTGGCAAAACAGCTGCATTTTGCGTTCCTGCATTGGAAAAAATTGATCAGGACAATAATGTTATTCAAGTTGTTATACTGGTCCCGACCCGAGAATTGGCTTTGCAAACATCTCAAGTGTGTAAAGAGCTTGGAAAGCACTTGAAAATTCAAGTTATGGTTACAACAGGTGGTACCAGCCTGAAAGATGATATAATGCGCTTATATCAACCAGTTCATTTACTAGTTGGAACTCCAGGACGAATAATAGATCTTGCTAAGAAAGGTGTTTGTATTCTGAAAGATTGCTCTATGCTTGTTATGGATGAGGCCGATAAGCTTCTGTCCCCAGAGTTCCAACCTTCTATAGAGCAGCTGATTCATTTTCTTCCCAGAAACCGTCAAATCTTGATGTTTTCAGCAACATTTCCCGTTACTGTAAAGGATTTCAAAGATAGGTATCTTCAAAAACCTTATGTCATCAACCTAATGGATGAGCTAACTCTGAAGGGTATTACACAATATTATGCATTTGTGGAAGAGAGACAGAAAGTCCACTGCCTAAATACTCTATTTTCTAAGCTGCAAATAAACCAGTCTATCATTTTCTGCAATTCAGTGAATCGGGTTGAACTCCTTGCCAAGAAAATCACGGAACTTGGTTATTCATGTTTCTATATTCATGCAAAGATGTTGCAAGACCATCGTAATAGAGTGTTTCATGACTTCCGCAATGGTGCATGTCGAAATCTTGTTTGTACTGATCTTTTTACTAGAGGAATAGACATTCAAGCagttaatgttgttattaattttgattttcccAAGAACTCAGAGACATACTTGCACAGGGTTGGTCGTTCAGGGAGGTTTGGGCACCTTGGTTTAGCAGTAAACTTGATTACTTATGAGGATCGCTTTAATTTATATAGGATTGAACAAGAACTTGGAACTGAAATAAAGCAGATTCCACCACAAATTGATCAGGCAATTTATTGCCGGTGA 1515 0.4033 MMNNNNNNNNRDRARYPPGMGLGRGGFNPNLNLNQNQSPNLIQNPNLNHAFQARPPYQQQPQYVQRHLVQPPPQQQQQWLRRDANAVDEVEKTVQSEAVDSSSQDWKARLKIPPADTRYKTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCVPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRIIDLAKKGVCILKDCSMLVMDEADKLLSPEFQPSIEQLIHFLPRNRQILMFSATFPVTVKDFKDRYLQKPYVINLMDELTLKGITQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPQIDQAIYCR 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2762 504 CDD SF2_C_DEAD 342 471 - -
Ssu4g2762 504 SMART helicmild6 381 462 IPR001650 -
Ssu4g2762 504 Gene3D - 87 334 IPR027417 -
Ssu4g2762 504 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 130 158 IPR014014 GO:0003724
Ssu4g2762 504 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 161 331 IPR014001 -
Ssu4g2762 504 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 12 504 - -
Ssu4g2762 504 Gene3D - 335 504 IPR027417 -
Ssu4g2762 504 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 200 484 IPR027417 -
Ssu4g2762 504 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 341 501 IPR001650 -
Ssu4g2762 504 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 277 285 IPR000629 -
Ssu4g2762 504 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 6 12 504 - -
Ssu4g2762 504 SMART ultradead3 149 345 IPR014001 -
Ssu4g2762 504 CDD DEADc_DDX6 132 332 - -
Ssu4g2762 504 MobiDBLite consensus disorder prediction 1 22 - -
Ssu4g2762 504 Pfam Helicase conserved C-terminal domain 356 462 IPR001650 -
Ssu4g2762 504 Pfam DEAD/DEAH box helicase 155 319 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2762 Ssu-Chr4 70582324 70588083 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g2762 130 501 Eukaryotic Initiation Factors Gene Family AT3G19760 37.968 1.24e-93 289
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2762 K12614 - gmx:100800861 904.82