Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2761 ATGGGAAGGACACCCTGTTGTGACAAGATGGGCTTGAAGAAAGGTCCTTGGACAGCTGAGGAGGATGAGATTCTTGTCAGTTATATCAACAAGAATGGTGGTCATGGAAGTTGGCGTTCTCTCCCCAAGTTAGCAGGTCTTCTTCGTTGTGGTAAGAGTTGCCGGCTAAGATGGACGAACTACCTTAGACCGGATATTAAACGGGGTCCCTTTACCCTAGAGGAAGAAAAACTAATCATACAGCTTCATGGTATTCTTGGAAATAGGTGGGCCGCTATAGCCTCTCAGCTATCGGGAAGAACAGACAATGAGATCAAGAATTTGTGGAACACCCACTTGAAGAAGCGGCTCATGTGCATGGGCCTTGACCCACAAACCCACCAGCCACTGGCCTGTTCAGGCAACCCAAATGACAAGGCCCATCATGCATCCACTTCAACCCGCCACATGGCCCAGTGGGAGAGTGCACGGCTTGAAGCAGAGGCCAGGCTCTCAAGGGAGTCATCATCCTTTGCCAACAACAAAACTGATTCTGACTATTTTCTCCGCATATGGAACTCTGAAGTTGGAGAATCTTTCCGTGGTGTGCACaaatcagaaaacaaaagtagcTGCCAAAGTCCCATTTCTCTAGGGTCATCTTCCTACCAATGTGGATCATCTTCCAACCCGGTGGGATCCTCAACCCCAGCAAGCATTGTGAAAGAAAATTTGGAGTGGAGTGAAAGGAAAACTGTCTCTGATTCATCAAGCTCTAGTGAACTAGAAGACTCGTGTGACACCTCATTGCACCTCTTGTTAGACTTTCCTATAAACAATGACATGAGCTTCTTAGAATGA 840 0.4643 MGRTPCCDKMGLKKGPWTAEEDEILVSYINKNGGHGSWRSLPKLAGLLRCGKSCRLRWTNYLRPDIKRGPFTLEEEKLIIQLHGILGNRWAAIASQLSGRTDNEIKNLWNTHLKKRLMCMGLDPQTHQPLACSGNPNDKAHHASTSTRHMAQWESARLEAEARLSRESSSFANNKTDSDYFLRIWNSEVGESFRGVHKSENKSSCQSPISLGSSSYQCGSSSNPVGSSTPASIVKENLEWSERKTVSDSSSSSELEDSCDTSLHLLLDFPINNDMSFLE 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2761 279 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Ssu4g2761 279 SMART sant 67 115 IPR001005 -
Ssu4g2761 279 SMART sant 13 64 IPR001005 -
Ssu4g2761 279 PANTHER PROTEIN ODORANT1-LIKE 1 278 - -
Ssu4g2761 279 SUPERFAMILY Homeodomain-like 10 109 IPR009057 -
Ssu4g2761 279 CDD SANT 16 62 IPR001005 -
Ssu4g2761 279 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Ssu4g2761 279 Gene3D - 70 117 - -
Ssu4g2761 279 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Ssu4g2761 279 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 278 - -
Ssu4g2761 279 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Ssu4g2761 279 Pfam Myb-like DNA-binding domain 68 113 IPR001005 -
Ssu4g2761 279 CDD SANT 70 113 IPR001005 -
Ssu4g2761 279 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Ssu4g2761 279 Gene3D - 11 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2761 Ssu-Chr4 70560972 70564588 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g2761 1 279 MYB Transcription Factor Family AT3G61250 64.460 1.92e-119 342
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Ssu4g2761 Myb_DNA-binding 2.6e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2761 K09422 - gmx:100788528 420.624
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g0759 3 18227859 18230184 Ssu4g2761 4 70560972 70564588 PCT