Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2755 ATGCCAATGATATACTATGTTGGTCAGATGAGCACATACTCCTCAATGGATGGAGTTCTCTATTGCAAGCCACATTTTGAGCAGCTTTTCAAGGAATCTGGCAATTTCAGCAAGAACTTTGGTAAGAAGAGGACCATCTTTTGGCCAATCTTTTTGGTCTATTCTCACAATCTCATACAACCTCACAAAGTACAAGTAGCAAAGTCTTCTGAGAAACAAAGCGACCTGAATAGGACCCCCAGCAAGCTATCTTCCATGTTCAGTGGAACCCTGGACAAATGTTCAGTTTGCTCAAAAACAGTCTATCCTCTAGAAAAGGTGACACTGGAAGGGGAATGCTACCACAAGACTTGCTTTAGGTGTGCTCATGCAGGGTGCCCTCTCACACATTCAAGCTATGCTGCCCTTGATGGTGTCCTCTACTGCAGGGTCCACTTTGCACAACTTTTCATGGAGAAAGGAAACTACAGCCATGTGCTCCAAGCTGCTGCACACAAGAGGACTGGTTCCTCTACACCTCCTGAGCCACTACTACTTGAGGAGCCATCACAGCCACCAGCAGCATCTGAGGACCAAACAGAAGAAGACACCTCCTGA 597 0.4623 MPMIYYVGQMSTYSSMDGVLYCKPHFEQLFKESGNFSKNFGKKRTIFWPIFLVYSHNLIQPHKVQVAKSSEKQSDLNRTPSKLSSMFSGTLDKCSVCSKTVYPLEKVTLEGECYHKTCFRCAHAGCPLTHSSYAALDGVLYCRVHFAQLFMEKGNYSHVLQAAAHKRTGSSTPPEPLLLEEPSQPPAASEDQTEEDTS 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2755 198 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 9 40 - -
Ssu4g2755 198 Gene3D Cysteine Rich Protein 90 158 - -
Ssu4g2755 198 ProSiteProfiles LIM domain profile. 92 152 IPR001781 -
Ssu4g2755 198 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 120 159 - -
Ssu4g2755 198 PANTHER GATA TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 9 43 - -
Ssu4g2755 198 PANTHER GATA TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 65 195 - -
Ssu4g2755 198 MobiDBLite consensus disorder prediction 165 198 - -
Ssu4g2755 198 Pfam LIM domain 94 149 IPR001781 -
Ssu4g2755 198 PANTHER OS06G0237300 PROTEIN 9 43 IPR045268 GO:0051015
Ssu4g2755 198 PANTHER OS06G0237300 PROTEIN 65 195 IPR045268 GO:0051015
Ssu4g2755 198 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 86 119 - -
Ssu4g2755 198 SMART lim_4 93 145 IPR001781 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2755 Ssu-Chr4 70492318 70493495 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Ssu4g2755 LIM 5.1e-10 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2755 - K09377 gmx:100305845 278.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g2755 4 70492318 70493495 Ssu4g2755 4 70492318 70493495 ECH
Ssu3g0761 3 18249837 18250999 Ssu4g2755 4 70492318 70493495 PCT