Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2754 ATGGATGTAGCTTTTAGGTTATCACAGTCCAATGTGGTATTGGATGGTTTGGATTCTTGCATTGTATTTGGAGGGAGAGGTTTTGGTTGTGCTTTTCTCGGCAACTCAAGGACTATTTCGAAAGCTCGTTTTAGTGGGATGAACAAGATAGGCAGTAGGAGTGGTTTGAGAGTAGAATGCGTAGGAGAGTTGAGAGCTTCCAATGGGAAGAGGGGTTTGTCTTGGAAGAATAATAAACTTTCTAGGGGAAATAGGGAAATTTGGTCAAAGTGTCAGGGTAACGATTCTTTAGCATATGTCAATGGCAATGGCCGGAATGTTGATAAGGTGGAAGGTGCAGGTGAGGACTCTGACTTGAGGTCCATTTCCAGTGCTGAATTGGTTGAACCTTTGGGAGACAAAGAACAAGGGCAAAATGAAGTAGAAGTAGAGGTACAAAATGTGGATGAATTGAAAGAGCTGTTGCAAAAGGCCATGAAAGAATTACAAGCTGCTCGAGTTAACAGCATCATGTTTGAGGAAAAGGTTAAGAAGATATCGGAGACTGCGATTTCTTTGCAGGATGAAGCAGCAAGTGCTTGGAACAATGTTACTTCTACCCTTGATGTCATCCAAGATATTGTGAGTCAAGAATTTGTTGCCAAAGAAGCTGTTCAGAAAGCAACTATGGCTCTTTCTCTGGCTGAGGCAAAGCTTCAAGTAGCCATAGACTCTTTGGAGGTTACAAAAGAAGTTTATGATTCCCCACAAGGTTCTAACAAGAGTAATGGTGATAAAGATATAATGCAAGAGGAGAAAGAACTTTTGGTTGCTCAGGAAGATATGAGGGAATGTCAGACAAATTTAGCAAATTGTGAGAATGAACTGAGATGCTTGCAATGTAGAAAGGAGGAGTTGCAGAATGAAGTGAACAATTTGCATGAAATTGCAGAACAGGCACAGCTGAAAGCAGCGAAAGCAGAAGAAGATGTCGCAAACATAATGCTTTTAGCAGAGCAAGCTGTTGCCGCTGAACTTGAGGCTGCACAACTCATGAATGATGCAGAGATTGCATTACAGAAAGCAGACAAATTTGCCTCTAGTTTTAATGCTGATACCAAAGACACTCTACAAGTACAAGATATTGTGGCTCTTCCTGAGGAGGAGAAAGTGGTTCAAGGTTTTTCTGGTGATGATACTCATAAAAGAGAGGTTGATTTTTCAATCAATGATGAGGCTTTGCTTGCCATGCAATTGCCAGAAACACAATCTGATAACACCAGCCAAAGTTTGGAAGACATGGCACAGTCTGATTATCTGAGTGATCATGAGAACGGGCAGTTAAGCTTAGACTCTTATAAAGAAGCTGAAGTTGAAATAGAGAAGTCAAAGAATGTAGTTCAAACAAAAAAGCAGGAAACACAGAAGACCAGAGATAATTCACTGGTTGCTCCCAAGACTTTATTGAAGAAGTCTTCCCGATTTTTTCCAGCATCATTCTTCTCTTTTACTGCAGATGAGACCGATTACACACCAGCATCAGTTTTCCATGGTCTTGTGGACTCTGCACAGAAGCAACTACCCAAGCTGGTTGTTGGGTTATTGTTAATTGGAGCAGGGGTTGTGTTCTATGCCAATAGAACAGAGAGGAGTGCTCAGCTACTTCAGCAGCCAGAAGTCATTGCAACCACTGTTGAAGAAGTTTCTTCTACAGCAAAGCCTCTGGTTAGACAGCTTCAGGAGCTTCCCaggagaattaagaaaattattgcaTCATTACCTGATCAAGAGGTGAACGAGGAGGAAGCCTCCCTCTTTGACATGCTCTGGTTACTACTTGCAAGTGTTGTATTTGTACCGATATTTCAAAAGATTCCTGGAGGCAGTCCAGTCCTTGGCTACTTGGCTGCTGGTATCTTGATTGGGCCTTATGGTCTCTCCATCATTCGCCATGTTCATGGGACAAAAGCAATAGCTGAGTTTGGAGTTGTTTTCCTGTTATTCAATATTGGCCTGGAGCTCTCTGTTGAAAGGCTTAGTTCAATGAAGAAATATGTCTTCGGATTAGGCTCTGCTCAGGTTTTGGTGACTGCTGTAGTTGTCGGCCTTGTGGCTCATTATATTTGTGGTCAAGCTGGCCCTGCTGCTATTGTCATTGGGAATGGCCTGGCATTATCATCAACTGCTGTTGTTCTGCAGGTCTTACAGGAGAGAGGCGAGAGCACATCACGGCATGGAAGGGCTGCATTTTCTGTTTTGCTTTTTCAGGATTTGGCTGTTGTTGTCTTGCTAATACTCATACCTCTTGTTTCACCTAATTCTTCCAAAGGAGGGGTTGGTTTTCAAGCCATTGCTGAAGCTCTTGGTCTGGCTGCTGTAAAGGCAGTGGTTGCCATCACAGCCATAATTGCAGGTGGACGATTGCTCCTTCGACCCATATACAAGCAGATTGCAGAGAATCAAAATGCAGAAATATTTTCTGCCAATACACTCTTTGTTATTCTTGGGACTAGCCTTCTCACAGCCAGGgCTGGACTTTCCATGGCATTGGGGGCATTTTTGGCTGGTTTACTACTGGCAGAAACTGAGTTTTCCTTACAGGTTGAATCTGACATTGCTCCATATCGTGGCCTTCTACTGGGTCTCTTCTTTATGACGGTTGGAATGTCAATTGATCCAAAACTTCTTGTTTCAAACTTTCCAGTCATTACAGGGACCCTGGGACTCTTGATATGTGGCAAGACTTTGTTGGTTTCTTTAATCGGCAGAATTTTTggtatttctctcatttctgcCATTAGAGTGGGTCTTCTTCTTGCTCCTGGGGGAGAATTTGCATTTGTAGCTTTTGGTGAAGCTGTTAATCAGGGCATAATGTCTTCCCAGTTGTCCTCTTTACTGTTTCTTGTTGTGGGAATTTCAATGGCTCTCACTCCATGGCTAGCTGCAGGAGGTCAGCTCCTTGCTTCCCGTTTTGAGCTGCATGATGTTCGAAGTTTATTACCTGTAGAAAGTGAGACAGATGATCTGCAAAATCATATCATTATTTGTGGATTTGGGCGAGTTGGGCAGATCATTGCACAACTTCTTTCTGAGCAACTTATTCCTTTTGTTGCACTAGACGTGAGAAGCGATAGAGTGGCAATTGGGCGTTCCCTGGATCTCCCTGTATACTTTGGAGATGCTGGTAATCGAGAGGTCCTACACAAGGTTGGGGCTGAAAGGGCAAGTGCTGCTGCAGTAACTCTAGATTCCCCTGGAGCAAATTATAGAACAGTTTGGGCTCTGAGCAAGTACTTCCCTAATGTGAAGACTTTTGTTCGTGCTCATGATGTTGATCATGGATTGAATTTAGAAAAGGCTGGAGCTACTGCTGTTGTCCCAGAGACCTTGGAACCAAGTCTTCAACTAGCAGCTGCCGTGCTTGCTCAGGCTAAACTTCCTGCATCAGAGATTGCAGCAACTATAAATGAATTCAGATCCCGCCATCTGGCTGAGCTCACTGAACTATCCGAAACAAATGGAACTTCTTTTGGATATGGATATAATAGAATTGCGAGCAAACCCAAACCTCCATCCCCAGATTCATCAGATGGTACTCAACTGGTTGATGGTGTCTACAGCAATGGTTTTAGGGTAGCTATTGAGGATTGGAGGGTTATTGAGTGTTGCAAGGAGGACTATAGTGTTAATAGGATGGAAATGTGGTTTAGTTTCAAACACGGGTATCCTTCGGGGATAAGGTTGAGCAAGAATTTCAACGCCAAGGTGAAGGAATGGCAGAGGTTGCCAAATGTAGGGCCTTATGTAGTGCCAATCTTTGAGTTTGATGCGCGAAGGTTGATCTATAGCTTGGACAGGGACTCATTCTGGGTTCTCTTTGGGGTTTGGTGGTTGGCCAAATGCTACAGAAACATGATGATGGCTGGATGTCGGCCTGATGTTGCAGGAAGAATGAGGCCCACAATGATGCTTAGGGTTCTGAACAAGCAGTTTCTTGGAATTGTTGGCGATGCAGCAAATGCGGCCACTAAGAAGCCACCCCCGCCTCCTCCTCTGGTGTCGCGCAAACCAGCTTTCATTGATGCATTCTTGTACAAGATGAAGAAGAACCCAAATCTTTTGTCGAACAAGACCATTTGGTCACGGAGATCCACTATCTTGCCAGAATTTGTTGATACCACTGTCAAGATTTACAATGGGAAAACCACTATTCGTTGTAGGATCACTGAGGGAAAAGAACATGATTTTGGAATGCTCCGCTGCGGGTGTCCTTTAATGTTTCTTTTACTGGTGTTTTTTTCCAACCTCGCAGATCAATCACCACCGCAACAGAATTGTGGAAACAACATTGATCAGTCGCAGACTGGATTAAACCATGATTGCACCACCACCCGGCTTCCTCCCATGTTGATGGAAAAGAACCTCCCGCACCACTTGCCGCAGCAACAGAATGGCGGGAACACCGCTCATACTCAGGTTGCCGCCTTGTCGCCAGCGGAATACTCGCCACTGGAGATCACCAACATTCAGGCAGGTCAGGTCCAGCTGCCAACTTATCCACATCACTCGCCGCCACAAAACGGTGGTTCGTCGGTGTCTGTTCCCTGA 4590 0.439 MDVAFRLSQSNVVLDGLDSCIVFGGRGFGCAFLGNSRTISKARFSGMNKIGSRSGLRVECVGELRASNGKRGLSWKNNKLSRGNREIWSKCQGNDSLAYVNGNGRNVDKVEGAGEDSDLRSISSAELVEPLGDKEQGQNEVEVEVQNVDELKELLQKAMKELQAARVNSIMFEEKVKKISETAISLQDEAASAWNNVTSTLDVIQDIVSQEFVAKEAVQKATMALSLAEAKLQVAIDSLEVTKEVYDSPQGSNKSNGDKDIMQEEKELLVAQEDMRECQTNLANCENELRCLQCRKEELQNEVNNLHEIAEQAQLKAAKAEEDVANIMLLAEQAVAAELEAAQLMNDAEIALQKADKFASSFNADTKDTLQVQDIVALPEEEKVVQGFSGDDTHKREVDFSINDEALLAMQLPETQSDNTSQSLEDMAQSDYLSDHENGQLSLDSYKEAEVEIEKSKNVVQTKKQETQKTRDNSLVAPKTLLKKSSRFFPASFFSFTADETDYTPASVFHGLVDSAQKQLPKLVVGLLLIGAGVVFYANRTERSAQLLQQPEVIATTVEEVSSTAKPLVRQLQELPRRIKKIIASLPDQEVNEEEASLFDMLWLLLASVVFVPIFQKIPGGSPVLGYLAAGILIGPYGLSIIRHVHGTKAIAEFGVVFLLFNIGLELSVERLSSMKKYVFGLGSAQVLVTAVVVGLVAHYICGQAGPAAIVIGNGLALSSTAVVLQVLQERGESTSRHGRAAFSVLLFQDLAVVVLLILIPLVSPNSSKGGVGFQAIAEALGLAAVKAVVAITAIIAGGRLLLRPIYKQIAENQNAEIFSANTLFVILGTSLLTARAGLSMALGAFLAGLLLAETEFSLQVESDIAPYRGLLLGLFFMTVGMSIDPKLLVSNFPVITGTLGLLICGKTLLVSLIGRIFGISLISAIRVGLLLAPGGEFAFVAFGEAVNQGIMSSQLSSLLFLVVGISMALTPWLAAGGQLLASRFELHDVRSLLPVESETDDLQNHIIICGFGRVGQIIAQLLSEQLIPFVALDVRSDRVAIGRSLDLPVYFGDAGNREVLHKVGAERASAAAVTLDSPGANYRTVWALSKYFPNVKTFVRAHDVDHGLNLEKAGATAVVPETLEPSLQLAAAVLAQAKLPASEIAATINEFRSRHLAELTELSETNGTSFGYGYNRIASKPKPPSPDSSDGTQLVDGVYSNGFRVAIEDWRVIECCKEDYSVNRMEMWFSFKHGYPSGIRLSKNFNAKVKEWQRLPNVGPYVVPIFEFDARRLIYSLDRDSFWVLFGVWWLAKCYRNMMMAGCRPDVAGRMRPTMMLRVLNKQFLGIVGDAANAATKKPPPPPPLVSRKPAFIDAFLYKMKKNPNLLSNKTIWSRRSTILPEFVDTTVKIYNGKTTIRCRITEGKEHDFGMLRCGCPLMFLLLVFFSNLADQSPPQQNCGNNIDQSQTGLNHDCTTTRLPPMLMEKNLPHHLPQQQNGGNTAHTQVAALSPAEYSPLEITNIQAGQVQLPTYPHHSPPQNGGSSVSVP 1529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2754 1529 Gene3D 30s Ribosomal Protein S19; Chain A 1347 1411 IPR023575 GO:0003735|GO:0005840|GO:0006412
Ssu4g2754 1529 TIGRFAM 2a37: transporter, monovalent cation:proton antiporter-2 (CPA2) family 605 885 IPR004771 GO:0006812|GO:0008324|GO:0016021
Ssu4g2754 1529 PANTHER K(+) EFFLUX ANTIPORTER 3, CHLOROPLASTIC 1 1199 - -
Ssu4g2754 1529 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 1003 1143 IPR036291 -
Ssu4g2754 1529 Pfam Sodium/hydrogen exchanger family 603 974 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
Ssu4g2754 1529 PRINTS Ribosomal protein S19 family signature 1373 1392 IPR002222 GO:0003735|GO:0005840|GO:0006412
Ssu4g2754 1529 PRINTS Ribosomal protein S19 family signature 1393 1405 IPR002222 GO:0003735|GO:0005840|GO:0006412
Ssu4g2754 1529 Coils Coil 446 466 - -
Ssu4g2754 1529 Gene3D - 594 980 IPR038770 -
Ssu4g2754 1529 SUPERFAMILY Ribosomal protein S19 1349 1405 IPR023575 GO:0003735|GO:0005840|GO:0006412
Ssu4g2754 1529 Coils Coil 261 354 - -
Ssu4g2754 1529 PANTHER K(+) EFFLUX ANTIPORTER 1, CHLOROPLASTIC-RELATED 1 1199 - -
Ssu4g2754 1529 Coils Coil 134 168 - -
Ssu4g2754 1529 ProSiteProfiles RCK N-terminal domain profile. 1006 1128 IPR003148 GO:0006813
Ssu4g2754 1529 Pfam TrkA-N domain 1007 1120 IPR003148 GO:0006813
Ssu4g2754 1529 Gene3D - 1002 1166 - -
Ssu4g2754 1529 Pfam Ribosomal protein S19 1369 1404 IPR002222 GO:0003735|GO:0005840|GO:0006412
Ssu4g2754 1529 Pfam Plant organelle RNA recognition domain 1221 1263 IPR021099 GO:0003723
Ssu4g2754 1529 MobiDBLite consensus disorder prediction 1510 1529 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2754 Ssu-Chr4 70455652 70484636 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g2754 91 1201 Inorganic Solute Cotransporters AT4G00630 70.062 0.0 1419
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2754 - - gmx:100791174 1970.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g2754 4 70455652 70484636 Ssu4g2754 4 70455652 70484636 ECH
Ssu3g0764 3 18285005 18294380 Ssu4g2754 4 70455652 70484636 PCT