Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2741 ATGCCGTTGGCCATGGAagaagcagcagcagcagcagcctCTTCTCAGAGAAAGCCGAAGAGGAAGCGAGCTCTGGCAACGAGCGATCCTGAACTCGACCGTCTCAACTCGCTTCCGTGGAACCCCACACTTCCTCAACACGACGACGATGACGCTTTCTCCATGTTCATTGGCTCCAATGAACTCGAAGGAGGTTTTCTTTCGCTCGAGGAGATTGATGAGGCTGAGTATGGTTTGAATATTCCTGAACCTGGAGTTgacaagaggaagaagaagaagtctaAACAGAACCAAAATGTGAAGAAACAGCAGCAGGATGGAGTTGATGGTGCTTGTAGTGACGTGGTTGAAGCAGAGTTGGACGAGAGCGTGAAGtctaaagagaagaaaaagaaaatgaagaagaagaaacagaaGGATGCTAGAGAAGACCAGAAAGTTGAGCAGTCAGATGCTGGTTTAGATACTGATGTGAAGGATATTGGGGAAGAGGACATGGATGAAACTGAATTTTATGCATGGAATGAATTGAGGCTTCATCCTCTCCTAATGAAAGCAATATGCAAGCTTGGCTTCAAGGAACCAACACCGATACAGAAGGCCTGTATTCCAGCTGCTGCTCATCAAGGGAAGGATGTTGTTGGGGCTGCAGAGACAGGATCTGGTAAAACGCTTGCGTTTGGTTTGCCCATTTTGCAACGCCTTttggaggagagagaaaaggcTGCAAAGATAGTTGAAGAAAGGGGTGAAGAACCTGAAAAGTATGCTCCTACAGGCCTTTTGAGGGCTCTTATTATTGCTCCAACTAGAGAACTTGCACTTCAGGTCGCTGATCATCTGAAAGCTGTAGCCAAGTATATTAATGTTAGGGTGACCCCTATAGTTGGGGGGATTTTAGCAGAAAAGCAGGAGAGACTTTTAAAAGCAAAGCCTGAGATTGTTGTTGGGACTCCAGGAAGATTATGGGAACTTATGTCAGCTGGAGAAAAACATCTAGTTGAGTTACATTCCCTGTCTTTCTTTGTGCTTGATGAGGCTGATCGGATGgtacaaaatggtcattttaagGAGTTGCAGTCAATAATTGATATGCTTCCCATGTCCAACGTCTCTTCTGAAGATAATTCTCAACATGTACAAAGTTGTGTTACAGTTTCTAGTtaccaaagaaagaaaaggcaaaCTCTTGTTTTTTCAGCAACTGTTGCACTGTCTGCTGATTTTCGCAAGAAGCTAAAACGTGGCTCAATTCAACAAAAACAATCATTGACAGATGGATTGAATTCTATTGAAACTCTTTCTGAGCGTGCAGGAATGAGATCCAATGCTGCAATTATTGATCTTACTAATCCGTCTATTTTAGCAGCTAAGCTTGAGGAGTCATTTATTGAATGCAGAGAAGAAGATAAAGATGcctatttgtattatattttgactGTCCATGGACAAGGCCGCACAATAGTTTTCTGCACGTCAATTGCAGCTTTACGCCATATTTCTTCCATACTGCGCATTCTTGGCATCAATGTTTGGACTCTTCATGCCCAAATGCAGCAGCGTGCACGTTTGAAGGCCATTGATCGCTTTCGTGAAAATGAAAATGGCATACTTGTTGCTACAGATGTTGCTGCAAGGGGTCTTGATATTCCTGGTGTTCGAACTGTTGTCCACTATCAGCTTCCACATTCAGCAGAGgtTTATGTTCATAGAAGTGGAAGAACAGCCAGAGCTTCTGCTGAAGGTTGTAGTATTGCTTTAATATCACCAAGAGATACATCAAAGTTTGCTTCATTGTGCAAGTCATTTTCTAAGGATACCTTTCAGCGGTTTCCTTTAGAGAACTCTTACATGCCAGAGGTCCTAAAGCGATTGTCTGTTGCACGTCAAATAGACAAGATAACGAGGAAGGATTCCCAGGAAAAGGCTGAGAAAAGCTGGTTTGATCGGAATGCTAGTTCGGTGGAATTAGTTACAGAAAATTATGACAGTGAAGAGGAACAAGTGAACAAACATAAGCAAATGAAGGCCAGCTCTAGACAATTGAAGAAATTGCAAGAGGAGCTCAATATGCTGATTTCACGTCCATTACAATCAAAAACATTTTCGCATCGGTATTTAGCAGGGGCTGGTGTCACACCCCTCATGCAGGAGCAATTGCAACAATTAGCAAGGCAAAAACTTAGTGATCACCAGGGTTCAGGACTAGGCAAAAAGGGAAAATTGGTTGTGATTGGTCAAGATTGTGTGGAAGCACTTCAGGCACTTCGCAGTGCTGGTGAAGAGGTGCGAATGGATGTCAAGGATTTGGCAGGAAAACAGAGAAATATGgagaatttaaaaagaaagcgAAAAGAGGAGAAGAAACGTTTGCGTGATCAGCGTAGAAAGCAGAGGAGAAAGCTAAAGCACGGGGATGAATAG 2424 0.4014 MPLAMEEAAAAAASSQRKPKRKRALATSDPELDRLNSLPWNPTLPQHDDDDAFSMFIGSNELEGGFLSLEEIDEAEYGLNIPEPGVDKRKKKKSKQNQNVKKQQQDGVDGACSDVVEAELDESVKSKEKKKKMKKKKQKDAREDQKVEQSDAGLDTDVKDIGEEDMDETEFYAWNELRLHPLLMKAICKLGFKEPTPIQKACIPAAAHQGKDVVGAAETGSGKTLAFGLPILQRLLEEREKAAKIVEERGEEPEKYAPTGLLRALIIAPTRELALQVADHLKAVAKYINVRVTPIVGGILAEKQERLLKAKPEIVVGTPGRLWELMSAGEKHLVELHSLSFFVLDEADRMVQNGHFKELQSIIDMLPMSNVSSEDNSQHVQSCVTVSSYQRKKRQTLVFSATVALSADFRKKLKRGSIQQKQSLTDGLNSIETLSERAGMRSNAAIIDLTNPSILAAKLEESFIECREEDKDAYLYYILTVHGQGRTIVFCTSIAALRHISSILRILGINVWTLHAQMQQRARLKAIDRFRENENGILVATDVAARGLDIPGVRTVVHYQLPHSAEVYVHRSGRTARASAEGCSIALISPRDTSKFASLCKSFSKDTFQRFPLENSYMPEVLKRLSVARQIDKITRKDSQEKAEKSWFDRNASSVELVTENYDSEEEQVNKHKQMKASSRQLKKLQEELNMLISRPLQSKTFSHRYLAGAGVTPLMQEQLQQLARQKLSDHQGSGLGKKGKLVVIGQDCVEALQALRSAGEEVRMDVKDLAGKQRNMENLKRKRKEEKKRLRDQRRKQRRKLKHGDE 807
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2741 807 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 343 351 IPR000629 -
Ssu4g2741 807 MobiDBLite consensus disorder prediction 1 52 - -
Ssu4g2741 807 CDD SF2_C_DEAD 459 588 - -
Ssu4g2741 807 MobiDBLite consensus disorder prediction 785 799 - -
Ssu4g2741 807 MobiDBLite consensus disorder prediction 123 161 - -
Ssu4g2741 807 Pfam Helicase conserved C-terminal domain 470 578 IPR001650 -
Ssu4g2741 807 PANTHER ATP-DEPENDENT RNA HELICASE DDX24 88 727 - -
Ssu4g2741 807 Gene3D - 456 699 IPR027417 -
Ssu4g2741 807 SMART ultradead3 191 421 IPR014001 -
Ssu4g2741 807 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 172 200 IPR014014 GO:0003724
Ssu4g2741 807 Coils Coil 655 695 - -
Ssu4g2741 807 Pfam DEAD/DEAH box helicase 196 404 IPR011545 GO:0003676|GO:0005524
Ssu4g2741 807 SMART helicmild6 498 579 IPR001650 -
Ssu4g2741 807 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 126 367 IPR027417 -
Ssu4g2741 807 MobiDBLite consensus disorder prediction 767 784 - -
Ssu4g2741 807 CDD DEADc_DDX24 183 448 - -
Ssu4g2741 807 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 263 594 IPR027417 -
Ssu4g2741 807 MobiDBLite consensus disorder prediction 767 807 - -
Ssu4g2741 807 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 204 421 IPR014001 -
Ssu4g2741 807 MobiDBLite consensus disorder prediction 77 109 - -
Ssu4g2741 807 Gene3D - 121 418 IPR027417 -
Ssu4g2741 807 PANTHER RNA HELICASE 88 727 - -
Ssu4g2741 807 Coils Coil 770 807 - -
Ssu4g2741 807 MobiDBLite consensus disorder prediction 138 159 - -
Ssu4g2741 807 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 458 619 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2741 Ssu-Chr4 70093246 70104235 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g2741 173 619 Eukaryotic Initiation Factors Gene Family AT5G11200 27.966 3.18e-40 153
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2741 K14805 - gmx:100806018 1367.83