Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2735 ATGCCTCGTGGGACGCTTGAAGTTGTTCTGATCAGCGCCAAAGGCCTCGAAGACAATGATTTTCTCTCCAGCATAGATCCTTATGTGATTCTCACATACAGGGCACAGGAGCACAAGAGCACTGTGCAAGAAGGTGCTGGATCCAACCCACAATGGAATGAGAGCTTTCTTTTCACTGTCTCTGACAGTGCTTCTGAACTTAATCTAAAGATAATGGATAAAGACAAGTTTAGTCAAGATGATTCTCTTGGCGAGGCAACCATTCATTTAGAGCCAGTCTTTGAAGAGGGTAGCCTTCCAGAAACTGCTTACAAGGTTGTGAAGGACCAAGAATATTGTGGAGAGATTAAGGTGGCTCTCACTTTCACTGCTGAGAAAAATGTGGACCAGGGTTACTCTGCACCTGAGGATAGCTATGGTGGATGGAAAGAATCGAGTGaggaattttaa 450 0.44 MPRGTLEVVLISAKGLEDNDFLSSIDPYVILTYRAQEHKSTVQEGAGSNPQWNESFLFTVSDSASELNLKIMDKDKFSQDDSLGEATIHLEPVFEEGSLPETAYKVVKDQEYCGEIKVALTFTAEKNVDQGYSAPEDSYGGWKESSEEF 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2735 149 ProSiteProfiles C2 domain profile. 1 103 IPR000008 -
Ssu4g2735 149 PANTHER C2 DOMAIN-CONTAINING 1 149 - -
Ssu4g2735 149 CDD C2_putative_Elicitor-responsive_gene 4 123 - -
Ssu4g2735 149 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 1 124 IPR035892 -
Ssu4g2735 149 PANTHER CALCIUM-DEPENDENT LIPID-BINDING (CALB DOMAIN) FAMILY PROTEIN 1 149 - -
Ssu4g2735 149 Gene3D C2 domain 2 124 IPR035892 -
Ssu4g2735 149 MobiDBLite consensus disorder prediction 130 149 - -
Ssu4g2735 149 Pfam C2 domain 4 99 IPR000008 -
Ssu4g2735 149 SMART C2_3c 5 102 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2735 Ssu-Chr4 70033800 70035665 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g2735 4 127 C2H2 Transcription Factor Family AT4G21160 31.452 3.51e-14 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2735 - - gmx:100500006 270.011