Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2727 ATGAGTTTTAGGGGTTTTTTAGACAACAAGTCAGGTAGTGGCGGTGCCAGAAACGTTTCAGATATTCCGTACAACAACGTTACCACTACCCACAGCAACGATAGAATGACCTTTGGTGCAATCTCTCAGCCACGCCTCGTGACCACTGCTCCCACTTTGGCCAAATCCATGTTCAACTCTCCGGGGCTGTCTCTGGCACTTCAAACCAATATAGATGGACAAGAAGATGTGAATAGAATGGCGGAGAATAGTAGCTTTGAACCAAACGGTTTGAGAAGAAGCAGAGAAGAAGAACATGAAAGCAGATCTGGCAGCGACAACATGGACGGCGCTTCCGGCGATGAACACGACGCCGCCGACAACCCTCCGAGAAAAAAACGCTATCACCGACACACTCCTCAGCAGATACAAGAGCTTGAAGCGTTGTTCAAGGAGTGTCCTCATCCAGATGAGAAGCAAAGACTGGAACTGAGCAAGAGGCTGAGCTTGGAAACTCGGCAGGTGAAGTTTTGGTTCCAAAATCGGAGAACCCAAATGAAGACCCAGTTGGAGCGCCACGAGAACACTTTGCTGAGGCAAGAGAACGACAAGCTGAGAGGGGAGAACATGTCCATCAGGGACGCCATGAGGAACCCCATGTGTTCCAACTGCGGTGGTCCAGCCATCATTGGCGAGATTTCGCTGGAGGAGCAGCACCTTCGGATCGAGAACGCGCGTTTGAAGGACGAGCTCGACCGCGTGTGCGCACTCGCGGGGAAGTTTCTGGGGCGCCCCGTTTCCTCTCTGCCGAACTCGAGTCTGGAGCTTGGAGTCGGAGGGAACGGGTTTGGTGGCATCAGCACTACTGTTCCTGCGGCAACGTTGCCTTTGGGACAAGATTTTGCGATGGGGATGTCTGTGTCGAATAACCCTTTGGCCATGGTGTCTGCTGCGGCGGCTACTAGGCCGACGGGTGTTGTGGGCGGGTTTGATAGGTCGATGGAGAGGTCGATGTTTCTCGAGCTTGCTTTGGCTGCGATGGATGAGTTGGTGAAGATGGCGCAGACCGGGGAGCCTCTTTGGATGCGGAATGTTGAAGGGGGGAGGGAAATCTTGAACCGTGAGGAGTACGTGAGGACGTTCACACCTTGCATTGGGTTGAGACCCAATGGGTTTGTGTCCGAGGCCTCTAGGGAGAATGGCATGGTCATCATTAACAGCTTGGCACTTGTTGAGACCCTTATGGACGCGAATCGATGGGCAGAGATGTTTCCTTGTATCATTCCCAGAACCTCCACCGCTGAAGTGATATCTAATGGAATAAACGGAACAAGAAATGGAGCACTTCAATTAATCCATGCTGAACTTCAAGTTCTTTCGCCTTTGGTGCCGGTTCGCGAGGTCAATTTCCTACGGTTTTGCAAGCAGCATGCAGAAGGGGTGTGGGCTGTGGTGGATGTGTCCATAGATAGCATCCGAGAAAGTTCGGGAGCGCCCACTTTTGTGAACTGTAGGAGGCTTCCTTCTGGTTGCGTGGTGCAAGATATGCCCAATGGTTACTCCAAGGTGACATGGGTGGAGCATGCAGAATACGATGAAAGCCAAGTTCACCAGCTCTATAGACCTTTGTTGGGCTCAGGCATGGGGTTCGGTGCCCAACGTTGGGTCGCTACCCTTCAACGCCAATGCGAGTGCCTTGCCATCCTAATGTCCTCAGCAGCACCCTCTCGTGACCATTCCGCAATAACAGCGGGGGGAAGGCGTAGCATGCTGAAGCTGGCGCAACGCATGACGAACAACTTCTGCGCGGGGGTGTGCGCATCGACGGTGCACAAGTGGAACAAGCTGAACGCGAGGAACGTGGACGAGGACGTTAGGGTGATGACGCGCCAGAGCATGGACGACCCCGGCGAGCCGCCTGGGATCGTGCTCAGCGCAGCCACCTCCGTCTGGCTCCCTGTCTCGCCCTATAGACTCTTCGACTTCCTCCGCGACGAGCGCCTCCGAAGCGAGTGGGACATACTCTCCAACGGTGGCCCCATGCAAGAGATGGCCCACATTGCCAAGGGCCAAGACCACGGCAACTGCGTCTCTCTCCTACGAGCTAGTGCGATAAATTCCAACCAGAGTAGCATGCTGATACTGCAGGAGACATGCATAGACGCGATGGGGTCACTTGTGGTGTACGCGCCGGTGGATATCCCGGCCATGCACGTGGTCATGAACGGTGGCGATTCGGCTTACGTGGCATTGTTACCTTCAGGGTTCGCAATTGTCCCCGATGGGCCTGGGTCTCGTGGGCCGCAGAATGGGCCCACTGCCACAACAAACGGCGGTGATAGTGGCGGGACGTGTGTGAGTGGGTCCCTTCTAACGGTGGCGTTTCAGATCCTTGTGAATAGTCTCCCTACAGCCAAGCTCACAGTAGAGTCCGTGGAAACCGTGAGCAACCTCATCTCGTGTACCGTTCAGAAGATCAAAGCCGCGCTTCACTGCGAAAGTTAA 2484 0.5447 MSFRGFLDNKSGSGGARNVSDIPYNNVTTTHSNDRMTFGAISQPRLVTTAPTLAKSMFNSPGLSLALQTNIDGQEDVNRMAENSSFEPNGLRRSREEEHESRSGSDNMDGASGDEHDAADNPPRKKRYHRHTPQQIQELEALFKECPHPDEKQRLELSKRLSLETRQVKFWFQNRRTQMKTQLERHENTLLRQENDKLRGENMSIRDAMRNPMCSNCGGPAIIGEISLEEQHLRIENARLKDELDRVCALAGKFLGRPVSSLPNSSLELGVGGNGFGGISTTVPAATLPLGQDFAMGMSVSNNPLAMVSAAAATRPTGVVGGFDRSMERSMFLELALAAMDELVKMAQTGEPLWMRNVEGGREILNREEYVRTFTPCIGLRPNGFVSEASRENGMVIINSLALVETLMDANRWAEMFPCIIPRTSTAEVISNGINGTRNGALQLIHAELQVLSPLVPVREVNFLRFCKQHAEGVWAVVDVSIDSIRESSGAPTFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQLYRPLLGSGMGFGAQRWVATLQRQCECLAILMSSAAPSRDHSAITAGGRRSMLKLAQRMTNNFCAGVCASTVHKWNKLNARNVDEDVRVMTRQSMDDPGEPPGIVLSAATSVWLPVSPYRLFDFLRDERLRSEWDILSNGGPMQEMAHIAKGQDHGNCVSLLRASAINSNQSSMLILQETCIDAMGSLVVYAPVDIPAMHVVMNGGDSAYVALLPSGFAIVPDGPGSRGPQNGPTATTNGGDSGGTCVSGSLLTVAFQILVNSLPTAKLTVESVETVSNLISCTVQKIKAALHCES 827
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2727 827 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 71 824 IPR042160 -
Ssu4g2727 827 SMART START_1 334 558 IPR002913 GO:0008289
Ssu4g2727 827 ProSitePatterns 'Homeobox' domain signature. 157 180 IPR017970 GO:0000981|GO:0006355
Ssu4g2727 827 Gene3D - 403 553 IPR023393 -
Ssu4g2727 827 MobiDBLite consensus disorder prediction 81 132 - -
Ssu4g2727 827 Gene3D - 111 198 - -
Ssu4g2727 827 SUPERFAMILY Bet v1-like 326 558 - -
Ssu4g2727 827 CDD START_ArGLABRA2_like 329 557 - -
Ssu4g2727 827 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HDG1 71 824 - -
Ssu4g2727 827 MobiDBLite consensus disorder prediction 1 24 - -
Ssu4g2727 827 MobiDBLite consensus disorder prediction 89 124 - -
Ssu4g2727 827 SUPERFAMILY Homeodomain-like 108 182 IPR009057 -
Ssu4g2727 827 ProSiteProfiles 'Homeobox' domain profile. 122 182 IPR001356 GO:0003677
Ssu4g2727 827 SUPERFAMILY Bet v1-like 586 820 - -
Ssu4g2727 827 Pfam START domain 334 558 IPR002913 GO:0008289
Ssu4g2727 827 Coils Coil 176 196 - -
Ssu4g2727 827 Pfam Homeodomain 125 180 IPR001356 GO:0003677
Ssu4g2727 827 ProSiteProfiles START domain profile. 325 561 IPR002913 GO:0008289
Ssu4g2727 827 SMART HOX_1 123 186 IPR001356 GO:0003677
Ssu4g2727 827 CDD homeodomain 124 182 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2727 Ssu-Chr4 69725202 69733538 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g2727 1 827 Homeobox Transcription Factor Family AT3G61150 65.348 0.0 1053
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Ssu4g2727 START 1.1e-57 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2727 K09338 - gmx:100811873 1478
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g2727 4 69725202 69733538 Ssu4g2727 4 69725202 69733538 ECH
Ssu4g2727 4 69725202 69733538 Ssu3g0811 3 19462576 19468477 ECH