Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2710 ATGGTGGAAGCTAGTAAAGATGTGGTAGCAGTTGATGCCTATTCCACGGAAGACTCGTTGTTGCATGCACAGGAACTTGTTCCTGTTGCTCTTGCTAAGGCAAGAGAGGTTAAGGGGTTCCCTGGTAGGTGGAAGATGATCATTTCAAAATTGGAGCAGATTCCGTCGCGATTATCAGACTTGTCTAGCCACCCTTGTTTCTCCAAGAATGCCCTTTGCAAGGAGCAATTGCAGGCTGTGTCAAAGACGCTTAAAGAAGCCATTGAATTGGCTGGGTTGTGTGTGAAGGAGAAGTACGAGGGTAAGCTTCGGATGCAGAGTGATCTTGATGCATTAACTGGGaaattggatttgaatttgaaggaTTGTGGTCTCTTGATCAAGACTGGCATGCTCGGTGAAGCTACTTTGCCATTAACTGTGTTAGGTTCTATGGCAGAATCAGATATTGCAACACACAACAATGTAAGAGAACTACTTGCGCGCCTTCAGATTGGTCACTTGGAAGCAAAGCACAAAGCCTTAGACAGACTCTATGATGTTATGAAAGAGGATGAGAAGAATGTTTTGGCTGTTCTTGGTAGGAGCAATGTTGCTGCTTTAGTTCAATTGCTCACAGCAACATCTCCACGGATAAGGGAGAAGACGGTTACTGTTATATGCTCTCTTGTGGAAATGGGGAGCTGTGAAAAGTGGCTGGTTTCTGAAGGAGTTCTGCCACCTCTTATAAGACTTGTTGAATCTGGTAGCGCTGTGAGTAAAGAGAAGGCTACAGTATCTCTTCAGAGATTGTCAATGTCGTCAGAAACAACCCGTGCAATTGTTGGACACGGTGGGGTTCGGCCATTGATTGAGCTTTGTCAAAGTGGTGATTCTGTGTCACAGGCTGCTGCTGCCTGTACTTTGACGAATGTATCGGCTGTTCCGGAGGTGAGACAGGCTTTGGCTGAAGAAGGTATTGTGAGAGTTATGATCAATCTTCTTAATTGTGGAATTTTATTAGGTTCCAAAGAGTATGCAGCTGAGTGCTTGCAGAATCTCACTTCCAGCAATGAGAATCTGAGAAGGTCTGTTATATCAGAAGGCGGTGTTCAGAGCCTTCTAGCCTATCTTGATGGCCCACTTCCCCAAGAATCAGCGGTTGGAGCATTGAGGAATCTGGTTGGATCAGTTTCTGAGGAAACTTTGGTTTCTCTTGGTTTGCTTCCCTGTTTGGTTCATGTGCTGAAGTTGGGATCTTTGGGTGCTCAACAAGCTGCCGTGTCTGTCATCTGCCGAGTTTGCAGTTCAATGGAGATGAAGAAAATGTTTGGTGAAGCTGGGTGCATTCCTCTTCTTATAAAGATGCTTGAGGCTAAAGCAAATGCTGCTAGAGAGGTTGCTGCTCAAGCAATTTCAAGCCTAATGGTTCTGTCCCAGAATCGGAGAGAAGTGAAGAAGGATGATAAAAGTGTGCCAAATCTGGTCCAGTTGCTTGATCCAAGCCCTCAGAACACTGCAAAAAAATATGCAGTTTCTTGCCTTGGATCACTTTCTCCAAGTAAGAAATGTAAGAAACTAATGATTTCATATGGAGCAATCGGGTATCTGAAAAAGCTTACAGAGATGGACATTCCAGGAGCTAAAAAGCTACTTGAGCGGTTGGAAAGAGGGAAATTGAGAAGCTTGTTCAGCAGAAAGTAG 1683 0.4415 MVEASKDVVAVDAYSTEDSLLHAQELVPVALAKAREVKGFPGRWKMIISKLEQIPSRLSDLSSHPCFSKNALCKEQLQAVSKTLKEAIELAGLCVKEKYEGKLRMQSDLDALTGKLDLNLKDCGLLIKTGMLGEATLPLTVLGSMAESDIATHNNVRELLARLQIGHLEAKHKALDRLYDVMKEDEKNVLAVLGRSNVAALVQLLTATSPRIREKTVTVICSLVEMGSCEKWLVSEGVLPPLIRLVESGSAVSKEKATVSLQRLSMSSETTRAIVGHGGVRPLIELCQSGDSVSQAAAACTLTNVSAVPEVRQALAEEGIVRVMINLLNCGILLGSKEYAAECLQNLTSSNENLRRSVISEGGVQSLLAYLDGPLPQESAVGALRNLVGSVSEETLVSLGLLPCLVHVLKLGSLGAQQAAVSVICRVCSSMEMKKMFGEAGCIPLLIKMLEAKANAAREVAAQAISSLMVLSQNRREVKKDDKSVPNLVQLLDPSPQNTAKKYAVSCLGSLSPSKKCKKLMISYGAIGYLKKLTEMDIPGAKKLLERLERGKLRSLFSRK 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2710 560 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 1 560 - -
Ssu4g2710 560 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 237 279 IPR000225 GO:0005515
Ssu4g2710 560 PANTHER ARMADILLO/BETA-CATENIN-LIKE REPEAT PROTEIN 1 560 - -
Ssu4g2710 560 SUPERFAMILY ARM repeat 156 537 IPR016024 -
Ssu4g2710 560 Pfam Armadillo/beta-catenin-like repeat 267 307 IPR000225 GO:0005515
Ssu4g2710 560 Gene3D - 336 550 IPR011989 -
Ssu4g2710 560 Gene3D - 152 335 IPR011989 -
Ssu4g2710 560 SMART arm_5 185 225 IPR000225 GO:0005515
Ssu4g2710 560 SMART arm_5 267 307 IPR000225 GO:0005515
Ssu4g2710 560 SMART arm_5 308 349 IPR000225 GO:0005515
Ssu4g2710 560 SMART arm_5 350 389 IPR000225 GO:0005515
Ssu4g2710 560 SMART arm_5 430 470 IPR000225 GO:0005515
Ssu4g2710 560 SMART arm_5 390 429 IPR000225 GO:0005515
Ssu4g2710 560 SMART arm_5 471 513 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2710 Ssu-Chr4 68723198 68724880 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g2710 416 543 U-box Gene Family AT3G54790 29.688 9.87e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2710 - - gmx:100809488 990.334