Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2709 ATGAGGCCTGTTTTCTGCGGAAACCTGGATTTCGACGCGCGTCAATCCGATGTCGAGAGGCTCTTCAGAAGATACGGCAAGGTGGATAGAGTCGACATGAAATCCGGGTTTGCTTTCGTCTACATGGAAGATGAACGTGATGCTGAGTATGCAATCAGAAGGCTTGATAGAACAGAATTTGGTAGAAAGGGACGCCGTATTCGTGTTGAGTGGACTAAGCAAGAACGTGACAATAGAAGGTCAGGTGATTCCAGAAAATCTTCATCTAATTCAAGACCATCCAAGACtttgtttgttataaattttgatCCAGTTCACACCAGGACAAGGGATTTGGAGAGACATTTTGATCCCTAtgggaaaatattaaatataaggaTCAGAaggaatttttcttttattcagtATGAATCCCAGGAGGATGCTACTAGAGCTTTGGAAGCGACCAACCTGAGCAAGTTTATGGACCGTGTTATCACAGTGGAGTATGCCATAAGAGATGATGATGAGAGAGACAGAAGAAATGGATACAGTCCTGATAGAAGAGGTCATGATTCTCCTGATGGGAGATATGGTCGTGGTAGATCCCCTAGTCCATATCGTAGAGGTAGGGGTAGCCCAGATTATGGCCATGGATCAAACCCATCTTCCAGACCAGAACCAAGAGGAAGCCCCAAGTACGAACGAGCTGAAAGCCCGATAAATGGGAGATATGATAGCCGGTCTCCCCCACCACGAGATAGGTCCCGATCCTGA 756 0.4339 MRPVFCGNLDFDARQSDVERLFRRYGKVDRVDMKSGFAFVYMEDERDAEYAIRRLDRTEFGRKGRRIRVEWTKQERDNRRSGDSRKSSSNSRPSKTLFVINFDPVHTRTRDLERHFDPYGKILNIRIRRNFSFIQYESQEDATRALEATNLSKFMDRVITVEYAIRDDDERDRRNGYSPDRRGHDSPDGRYGRGRSPSPYRRGRGSPDYGHGSNPSSRPEPRGSPKYERAESPINGRYDSRSPPPRDRSRS 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2709 251 MobiDBLite consensus disorder prediction 170 251 - -
Ssu4g2709 251 SUPERFAMILY RNA-binding domain, RBD 2 170 IPR035979 GO:0003676
Ssu4g2709 251 SMART rrm1_1 96 162 IPR000504 GO:0003723
Ssu4g2709 251 SMART rrm1_1 3 70 IPR000504 GO:0003723
Ssu4g2709 251 MobiDBLite consensus disorder prediction 222 251 - -
Ssu4g2709 251 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 4 213 - -
Ssu4g2709 251 PANTHER - 4 213 - -
Ssu4g2709 251 MobiDBLite consensus disorder prediction 170 191 - -
Ssu4g2709 251 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 74 IPR000504 GO:0003723
Ssu4g2709 251 MobiDBLite consensus disorder prediction 73 94 - -
Ssu4g2709 251 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 97 159 IPR000504 GO:0003723
Ssu4g2709 251 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 63 IPR000504 GO:0003723
Ssu4g2709 251 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 95 166 IPR000504 GO:0003723
Ssu4g2709 251 Gene3D - 1 86 IPR012677 -
Ssu4g2709 251 Gene3D - 87 177 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2709 Ssu-Chr4 68704716 68707753 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g2709 4 173 Eukaryotic Initiation Factors Gene Family AT1G49760 24.599 1.26e-09 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2709 K12893 - gmx:100797778 433.721
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g2709 4 68704716 68707753 Ssu4g2709 4 68704716 68707753 ECH