Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2708 ATGGCAGGACCCCAAGCTACGAACTGTGCTTCTGCTACAACCACTGCCACGACGAGCAACATGGCCAGATCAAACAAACCACCCATCAGAAAGTTCATTGGGGTGAGGCAGAGGCCCTCAGGAAGGTGGGTGGCTGAGATCAAAGACTCTTCTCAGCACGTGAGGTTGTGGCTTGGAACCTATGACACCCCAGAAGAGGCTGCAAGGGCTTATGATGAAGCAGCAAGAGCTCTGAGAGGTGAAAATGCCCGAACCAACTTTGCACCAATAAACCAAGCCACAGGCCAGTCAGGCTCTAACCTACCAACTGGGTCTGATGGGAAGCATGGTTTGAGCTTTGCTTCCTTGAAGGCCAGGTTGAGCAAGAATCTTCAAAACATTATGGCAAGGGCAAGTGATAACAACAAGTCCTCAAAGAGTAGGGTGAGTGACCACTTCACCTTTGCCAGCATCTTCCACCGCAGGAGTTACCAAATCCCTGAGGTGGACATGAGGAACATTGAGAAAGTGGTGCAGCCTAGTATTATTGTGCCTCCTGTCGAAGGTGGTGATTATTCTGTTGCTAACTGGGAAAGTGCATCTAGTGTTTCTGATTGTAGCTCTGAGTGGCTCGGGTTCAGGCAAGTCGGGTTGGACTCGGACGGGTCGGATATTGGGGATGTTAGTGTTGGTGATCAAGGGTTCTTGGACCAGTTGATGGGGTGGGTTGATAGCCCTAATGTTAGTGATCAAAGTGAGGGTTCAAGGAGTAAGAGGTTCAAGGTGTCTTCTTCTGTGCTTGTGCCACCAACTTTCACTGGCTCTCCTTATGATTGTGGATCCCCTTATAGCGGTTATGCCTCTCCTTATAACGGTTATGCCTCTCCATATAACGGTTGTGCCTCCCCTTGTAATGGTTATGCTTCTCCATATTACAATAAGAAGTGA 927 0.4908 MAGPQATNCASATTTATTSNMARSNKPPIRKFIGVRQRPSGRWVAEIKDSSQHVRLWLGTYDTPEEAARAYDEAARALRGENARTNFAPINQATGQSGSNLPTGSDGKHGLSFASLKARLSKNLQNIMARASDNNKSSKSRVSDHFTFASIFHRRSYQIPEVDMRNIEKVVQPSIIVPPVEGGDYSVANWESASSVSDCSSEWLGFRQVGLDSDGSDIGDVSVGDQGFLDQLMGWVDSPNVSDQSEGSRSKRFKVSSSVLVPPTFTGSPYDCGSPYSGYASPYNGYASPYNGCASPCNGYASPYYNKK 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2708 308 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 249 - -
Ssu4g2708 308 Gene3D AP2/ERF domain 30 89 IPR036955 GO:0003700|GO:0006355
Ssu4g2708 308 MobiDBLite consensus disorder prediction 1 25 - -
Ssu4g2708 308 ProSiteProfiles AP2/ERF domain profile. 31 88 IPR001471 GO:0003700|GO:0006355
Ssu4g2708 308 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 1 249 - -
Ssu4g2708 308 CDD AP2 31 88 IPR001471 GO:0003700|GO:0006355
Ssu4g2708 308 SMART rav1_2 31 94 IPR001471 GO:0003700|GO:0006355
Ssu4g2708 308 Pfam AP2 domain 31 80 IPR001471 GO:0003700|GO:0006355
Ssu4g2708 308 SUPERFAMILY DNA-binding domain 31 88 IPR016177 GO:0003677
Ssu4g2708 308 PRINTS Ethylene responsive element binding protein signature 32 43 IPR001471 GO:0003700|GO:0006355
Ssu4g2708 308 PRINTS Ethylene responsive element binding protein signature 54 70 IPR001471 GO:0003700|GO:0006355
Ssu4g2708 308 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2708 Ssu-Chr4 68695218 68696144 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g2708 31 88 AP2-EREBP Transcription Factor Family AT5G19790 75.862 3.39e-26 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Ssu4g2708 AP2 6.7e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2708 K09286 - gmx:100799444 447.588