Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2706 ATGGACTCTGACAAGTTCCGATCAGTTGATTTGAAGTACATTTGTCCAGTACCGGGTATCAAAGTTTTGGTTGTAGATGGCGACTTGACATGCCTAGCAACTGTATCAGAAATGCTTCGTACCCTTAGATATGAAGTTGTGACTGCTTCACTAGCTTCTGAAGCATTATCCATTGTTGAGGAGAAGAAGAATGAGCTTAACCTTGCGCTTGTGGATGTTCACTTGCCCGACATGGAAATAAATGCACTCACAgacaaaataagagaaatctCTGACCTGCCATATTATCTTATGACTGCTGATGATAATCTGTTTAGCACATCAAGCGAACTGTGCAATGGATCTAAACTGTATTTTAAAAAGccaattatgatttttgatctAAGTGGCCTGTGGAAATTTGCAATGTTGAAAAGAGAAGATGGAAGAATAGCAAGGGTAGATGTAGGAGGCTTTTGGCGGCTTCAGTCACAGGAAATTATTGTAAACAACAGTCGAGAATGCCAACCATTCATGAACACAGGAGAGCAGATTCTCCAAAGTGCAAaaagggaagaacaagaacttAAAATAGGGGGAGAACAAAGTGAATCATTAGTGCTGAAAAGGAAAAGGCTTAGCTGGACTGATGATTCATGTACGAAGTTCTTGGGAGCTGTTGAATCAGCACAAATCAATGCTCCTCCAAATCAAAGACGCCAACTTAGGAATGTGCCAGGACGTACAAAAGAGAACGCTACAAACCATTTACAGAGATCTCATCATTCTTTGAAACAAGCTAATCCAATTCAACAGCACAGAAATACACATTCATCTGATTTGAATTCGGGATCACAGAGCGCTTCTCAGACTAACAATGATAAAAGACACAGGCCTCAATTGCACAACCGTCAGATTTATCTCTGTAATTGCATGTATCTGCGTTCCCTATGTCCGCCATTAGTTGCATTCTCAATTTCAGGTCCAAGTGGTGAGACATTGACTTACGGGAAAAAGCAATTGTATCCACTGCAGGACCTGTTTGGTTTTGCACACTACCCATCTGGCTCGGGTGAATTTACGAACAATGGTAATGGGGAGGCAAGTGCAGACATCGGCCAAGTTGAAAATTCTACTGATGGAAAAGTTTTTAGTGAGGATACATGTGTCTACTGTGTGGATGATCTCGCTGAACAAAATGAAATGGATTTTTCAACACTGTTAGCCAATGATAACATGTGCCAACAATTTCCTTCACAACTTCCTGTTCCTCTTCTACCATCAGATGAAAAAGAACATGGCATTTTTGGGGTTGAAGCAGGACAGATTGATGACATTTTTTATCCCCCAAATGGAACTCAGCAGTTTAGTGATGAGGATTTAAATGTCTGGTTATCAGCGGTTAATCCCAGaGAATTGCTCAATGATGCCGTTGCTTGA 1419 0.3953 MDSDKFRSVDLKYICPVPGIKVLVVDGDLTCLATVSEMLRTLRYEVVTASLASEALSIVEEKKNELNLALVDVHLPDMEINALTDKIREISDLPYYLMTADDNLFSTSSELCNGSKLYFKKPIMIFDLSGLWKFAMLKREDGRIARVDVGGFWRLQSQEIIVNNSRECQPFMNTGEQILQSAKREEQELKIGGEQSESLVLKRKRLSWTDDSCTKFLGAVESAQINAPPNQRRQLRNVPGRTKENATNHLQRSHHSLKQANPIQQHRNTHSSDLNSGSQSASQTNNDKRHRPQLHNRQIYLCNCMYLRSLCPPLVAFSISGPSGETLTYGKKQLYPLQDLFGFAHYPSGSGEFTNNGNGEASADIGQVENSTDGKVFSEDTCVYCVDDLAEQNEMDFSTLLANDNMCQQFPSQLPVPLLPSDEKEHGIFGVEAGQIDDIFYPPNGTQQFSDEDLNVWLSAVNPRELLNDAVA 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2706 472 PANTHER TWO-COMPONENT RESPONSE REGULATOR 21 464 IPR045279 GO:0009736
Ssu4g2706 472 SMART REC_2 20 132 IPR001789 GO:0000160
Ssu4g2706 472 MobiDBLite consensus disorder prediction 246 287 - -
Ssu4g2706 472 SUPERFAMILY CheY-like 18 135 IPR011006 -
Ssu4g2706 472 MobiDBLite consensus disorder prediction 246 292 - -
Ssu4g2706 472 Gene3D - 19 145 - -
Ssu4g2706 472 Pfam Response regulator receiver domain 22 125 IPR001789 GO:0000160
Ssu4g2706 472 ProSiteProfiles Response regulatory domain profile. 21 136 IPR001789 GO:0000160
Ssu4g2706 472 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR16 21 464 - -
Ssu4g2706 472 CDD REC_typeB_ARR-like 22 135 - -
Ssu4g2706 472 Gene3D - 203 258 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2706 Ssu-Chr4 68644552 68648976 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g2706 16 240 Response Regulator Gene Family AT4G16110 31.092 3.05e-22 98.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Ssu4g2706 Response_reg 1.4e-08 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2706 - - gmx:100801594 554.673