Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Ssu4g2704 | ATGGGTTCTGAATATCATGGTAATGACCCTGAACCAGCTTTTGTTGCTGCAATCCCCACTTTGAATTTCAACCATGAAGCCTTCAGTTCCATTGAAAGTACACAGTGTGTGATATGTTTGGCAGAgtacaaagaaaaagaactatTGCGCATCATACCAAAATGTGGCCACACTTTTCATCTTTCTTGTATTGATATGTGGCTGAGAAAACAATCTACATGTCCAGTGTGCCGTTTGTCACTGCAGAATGCTTCTGAAACAAAACATGTGAGATCTGTAACATTTACCATCAGGCAATCTCTTGATGAGTCCAATACTTCAGAAAGAAACACAAATAATGAGAGGCAAGTTGAACTTAATGCTAGTAACACCCTACGATCAACTTTGGGAGAACCAGAACCTAGACAGTGA | 411 | 0.3844 | MGSEYHGNDPEPAFVAAIPTLNFNHEAFSSIESTQCVICLAEYKEKELLRIIPKCGHTFHLSCIDMWLRKQSTCPVCRLSLQNASETKHVRSVTFTIRQSLDESNTSERNTNNERQVELNASNTLRSTLGEPEPRQ | 136 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Ssu4g2704 | 136 | SMART | ring_2 | 36 | 77 | IPR001841 | - | |
| Ssu4g2704 | 136 | PANTHER | OS11G0150450 PROTEIN | 4 | 119 | - | - | |
| Ssu4g2704 | 136 | SUPERFAMILY | RING/U-box | 29 | 86 | - | - | |
| Ssu4g2704 | 136 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 12 | 88 | IPR013083 | - | |
| Ssu4g2704 | 136 | Pfam | Ring finger domain | 35 | 78 | IPR001841 | - | |
| Ssu4g2704 | 136 | MobiDBLite | consensus disorder prediction | 99 | 130 | - | - | |
| Ssu4g2704 | 136 | PANTHER | OS02G0676500 PROTEIN | 4 | 119 | - | - | |
| Ssu4g2704 | 136 | MobiDBLite | consensus disorder prediction | 99 | 136 | - | - | |
| Ssu4g2704 | 136 | CDD | RING-H2_EL5_like | 35 | 78 | - | - | |
| Ssu4g2704 | 136 | ProSiteProfiles | Zinc finger RING-type profile. | 36 | 78 | IPR001841 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Ssu4g2704 | Ssu-Chr4 | 68623806 | 68624945 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Ssu4g2704 | 26 | 116 | C3H Transcription Factor Family | AT4G10160 | 39.560 | 9.58e-19 | 77.0 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Ssu4g2704 | - | - | gmx:100810553 | 224.172 |