Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2701 ATGGGCACTCAGGTGCAGCAACTAAGAAGATTCAACTCAATGGAACGCAGGCCAAGAATGCTGAAGGACTTCCTCAGCGAGAGCCTAAACTCTTGTTCCTCAAGCGGCTTCAAATCACTTCCAAGAAAACCAAACAACAGCAGCATGCACAGCCTCATAGAAATGGAACTCAAATCACCACCATCGTCAAACTCGCCCTTTCAAACACTCGTGAACACCATAAGAAGCatctctctcttcacttcaaCGAGAAAATCACCCTCCGTGCTCTCCCTACCCGGGAGCCTCTCGCGCAGGCTATCGTCGTCAAGgagaagaataagaagaagaagaagccaagtGTGCAACGAAATCAACGTCAGAACGGTGAAGATCAAGGACATCATACGGTGGAAATCGTTCAGGGACGTTGTGGAACCCTCTCTTCCACCACCGCCGTTGGATCTCATGGTGGGGCCCAGCAACGCAACTGGTGCCGCCACTTGTTCTAGCAGCAGTGACTCTAGTTGGAGTGAGAGTGATTTTTTCACCAATAATGCATGGGAAGAAGCACAAAACGACAACGTTGAAGCGGGTAAGAGGATCTCGTTTTCACCCCTCGTTGTCGGCAAGGACTCCGTGGCCAGGGAAGTTTTAACTTGCCAAGAAGAACAACACAGTCCAGTTTCAGTTCTTCAGGTTGGAGAAGATGAATTCTCCCTTTTTGATCAAAGCCTTGCCACTATTAAAAGGAGAAAACAGAAGTTCATACAAACAGCTCAGAAATTGGAGTCTCTTGCAAAATTTGACCTTGCAAACTTAGACCAATGTCTCTCATTGGATGACAACTCTGGCTATGATGAAgaatatgaagatgatgatgatgatgataatgacaTTGAAGAACAAGATTTGATTGAGGAAAAGGCAAAGCAACTGCTACATTGCGTTAGAGCAAGAGGTTCAGCACAGGGCTGTAAAGACTATTTGGATACACTTCTGTTGGATTTTTTCAGGGAAGAACTAAGTGGAAGTAGAAACCAATATAAGAATGATGAGGAGTTTGAGTTGGAGACATTGAGAATAGCTGAAGATTGGATAAATGGGTCATTTGCTTTTGATACAGGGCATGTTAATAAAGATGCTTATATCAAGGACATGGATAGGAGAGATCAGTGGAGTAGGTTTGAGGAGGAGCAAGAAGAATTGGCTTTTGAAATTGAGACAGCTATATTGCATAGTTTGGTTGCTGATGTTCTGGACCTGGATgattaa 1254 0.4187 MGTQVQQLRRFNSMERRPRMLKDFLSESLNSCSSSGFKSLPRKPNNSSMHSLIEMELKSPPSSNSPFQTLVNTIRSISLFTSTRKSPSVLSLPGSLSRRLSSSRRRIRRRRSQVCNEINVRTVKIKDIIRWKSFRDVVEPSLPPPPLDLMVGPSNATGAATCSSSSDSSWSESDFFTNNAWEEAQNDNVEAGKRISFSPLVVGKDSVAREVLTCQEEQHSPVSVLQVGEDEFSLFDQSLATIKRRKQKFIQTAQKLESLAKFDLANLDQCLSLDDNSGYDEEYEDDDDDDNDIEEQDLIEEKAKQLLHCVRARGSAQGCKDYLDTLLLDFFREELSGSRNQYKNDEEFELETLRIAEDWINGSFAFDTGHVNKDAYIKDMDRRDQWSRFEEEQEELAFEIETAILHSLVADVLDLDD 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2701 417 PANTHER DUF4378 DOMAIN PROTEIN 4 416 - -
Ssu4g2701 417 PANTHER OS04G0572500 PROTEIN 4 416 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2701 Ssu-Chr4 68577808 68579962 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g2701 14 413 TRM (TON1 Recruiting Motif) Superfamily AT4G00770 30.734 8.11e-42 151
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2701 - - gmx:100802653 561.992