Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2695 ATGTATAAATATTCAGTTAttcacacacaaacacactcGCACTCAACACCGTCCATCTCGCTATTACATATATCCTTAAACACTTGTTGTATTCACCTACGTTGTTGTTCAGTCATGGGTGATGAAGCGTCCGGAGACGTTGATCTGAGGCTGGGGGAACCCAAGGGACCCAAAGAGGAGCCGGAGACGGAAGATGCGTCGGCGATACGCGTGATGCCGGTGGCGGTGCACGTGCCCATGTCGATGTCCAAGGCCCTGGCCCAGGCCCAACCCCAGAAGCGGGCCTCCACCAAGGACCGGCACACGAAAGTAGAGGGCCGAGGCAGGAGGATCCGAATGCCCGCCACGTGTGCGGCGCGGATCTTCCAACTGACCCGCGAACTCGGCCACAAGTCCGACGGCGAAACCATCCGGTGGCTCCTCGAGCACGCGGAGCCCGCCATCATCGCCGCCACCGGCACCGGCACCGTCCCCGCCATCGCGATGTCCGTCAACGGAACCCTCAAGATCCCCACCGCCTCCCCCTCCAACCCGGACCCCGAACCCGGGGGGGACCCGCCCGAGAGGAAGAAGCGCAAACGACCCGCCAACAGTGCCTACGTGGACGTGAACGGCGGCGCCGTTTCGGTCTCCGTGGGGCTCGCCAGCTCGAACAACCAAAACGCAGcaacgacgacgacgacgacaaTTCCGCAACAGGCCGCGATTCCGTTGCCGCAGGGCGTGGTCCCCGTGTGGGCCATACCCTCAAACGCCGTCGTTCCGGCTGCAGGCGCGTTCTTCGTCGTCCCCCAAACGCCGTCGTTTCAGCACCAGCCGCAGTTCTTCACCATAGCGAGACCTATCTCCGCGTTTGTCTCTTCCATGGTCACCCCCGTTCAACTCCAACCAACCTCTACCCCAACCTCTTCCGCCAACGTTAACAACCCCTCCTCCACCGCGCCGTCGTCGAAATCGCCGGCGAGAGCCACCGCCATGGCTccgaccaccaccaccaccacaacaacGCAGATGCTAAGAGATTTCTCCTTGGAGATTTACGACAAGCAAGAGTTGCAGTTCATGTCTCGCGCGTCTTCGAAGCATTGA 1089 0.5767 MYKYSVIHTQTHSHSTPSISLLHISLNTCCIHLRCCSVMGDEASGDVDLRLGEPKGPKEEPETEDASAIRVMPVAVHVPMSMSKALAQAQPQKRASTKDRHTKVEGRGRRIRMPATCAARIFQLTRELGHKSDGETIRWLLEHAEPAIIAATGTGTVPAIAMSVNGTLKIPTASPSNPDPEPGGDPPERKKRKRPANSAYVDVNGGAVSVSVGLASSNNQNAATTTTTTIPQQAAIPLPQGVVPVWAIPSNAVVPAAGAFFVVPQTPSFQHQPQFFTIARPISAFVSSMVTPVQLQPTSTPTSSANVNNPSSTAPSSKSPARATAMAPTTTTTTTTQMLRDFSLEIYDKQELQFMSRASSKH 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2695 362 MobiDBLite consensus disorder prediction 294 335 - -
Ssu4g2695 362 MobiDBLite consensus disorder prediction 87 107 - -
Ssu4g2695 362 MobiDBLite consensus disorder prediction 47 66 - -
Ssu4g2695 362 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 56 362 IPR005333 GO:0003700
Ssu4g2695 362 PANTHER TRANSCRIPTION FACTOR TCP9 56 362 - -
Ssu4g2695 362 ProSiteProfiles TCP domain profile. 97 151 IPR017887 -
Ssu4g2695 362 MobiDBLite consensus disorder prediction 183 197 - -
Ssu4g2695 362 MobiDBLite consensus disorder prediction 168 197 - -
Ssu4g2695 362 Pfam TCP family transcription factor 96 191 IPR017887 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2695 Ssu-Chr4 68470177 68471265 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g2695 73 361 TCP Transcription Factor Family AT2G45680 52.134 5.77e-87 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Ssu4g2695 TCP 1.6e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2695 - - gmx:100804760 451.825