Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2693 ATGGACAATTATGGGTCTTCACAACATCCATATGGGTATCCAAACCCTTATTTGTCCCCTGGCAACACCCCTCCATACCCTCCTCCTCCTGATCCATATGCACCTACACCATATGCATATCCACCAAATCATCAACATTCCTTCAACTACTCATACCCCCCACCTCCTCCACCACACTCCTCAGCCCCTTATTCTAGCCACATGGACTATTCATACCCCCCACCACCCCCTCCACCACACTCCTCAGCCCCTTATTCTGGCCACATAGACTATTCATACCCCCCACCACCTCCTCCAACCACCTCATCAGCTGGCTCCTATGACTTTCATTGGCCCCAGCCACCTCACACCTATCCTTACCCTCACCAAGCCCCTCCAGAATGGAGTGTCACAGCAGGTGGGGTGTCTCAAACTAGTGATAGTTTTAACCCTCCTCACTCTTCTGCTTACCCTCCTTTGGATGATCTCATGAGCAATGTTAGGCTGTCTGATAATAACCAGCCAAGCGCACCTCCATTGACACATTCCGTTTCAATTCCaaatcaagagaaaagaaatgagtTTTATGGTTATCCTAGCCACTCCTCCTCAAGTTTGGATCAGGGGGATCCTTCTAGACTTTCAGCTAGTTCTGATGACTCAGTGCATAGTCAGAGCTTGCAGATTGTGCCAGCTCAGCACAAAGGGTCCCTGAGAGTTTTGCTCCTGCATGGGAATTTGGATATTTGGGTTCATGGAGCCAAAAAGCCTTCCAAACATGGACATGTTCCACAAGACTTTGGGGGATATGTTTGGGAGATTGCCTGTGAGAACCCTGTGTGGGAGCAACATTTCAATGTTCCTGTTGCACATCATGCTGCCGAAGTTCACTTTGTTGTCAAGGACAGTGATGTGGTGGGTTCACAGCTCATTGGCATTGTGGCAATTCCTGTGGAACAAATATACTCAGGGGAAAAGGTACAAGGGACCTACCCTATTCTGAATAGCAATGGAAAGCCTTGTAAGCCAGGTGCTGTCTTGAGGGTATCCATTCAGTACATTCCAATGGAGAGACTTATCATGTATCATCAAGGAGTTGGAGCTGGTCCTGACTACATTGGGGTTCCTAGCACATATTTTCCATTGAGGAAAGGTGGAACAGTTACTCTATATCAAGATGCTCATGTTCCAGATGGCTGCCTCCCTAATATTGTGCTCGACCATGGCATGTATTATGCTCATGGAAAGTGTTGGCACGACATCTTTGACGCCATTCGTCAAGCTCAGCGTTTGGTTTACATTACAGGGTGGTCAGTGTGGCACAAAGTTAGGTTGGTAAGGGATGCTGGCCATGCATCAAATTTCACCTTGGGTGATCTTCTGAGGACTAAGTCACAGGAAGGAGTAAGAGTGCTTCTCCTTGTTTGGGATGACCCTACATCAAGAAGCATTCTTGGTTACAAAATGGATGGTGTCATGGCAACTCATGATGAGGAAACTAGACGATTTTTCAAGCACTCTTCTGTGCAAGTGCTACTTTGTCCTCGCATTGCTGGAAAACGAAATAGCTGGGCCAAACAAAAGgAAGTTGGAACAATATATACACACCATCAGAAAACTGTAATTGTGGATGCTGATGCtggaaataacaaaagaaaaattgtagcATTTGTTGGCGGACTTGATTTGTGTGACGGGCGATATGATACTCCCCACCATCCTCTCTTTAGGACACTGCAGACACTGCATAAGGATGACTATCACAACCCTACATTCAcgGGTAATACTGGTGGTTGTCCACGGGAGCCATGGCATGACTTACATTCTAAAATTGATGGTCCAGCAGCTTATGATGTTTTGAAAAACTTTGAGGAGCGCTGGTTAAGAGCTGCAAAACCTAATGGGATTAAAAAGCTGAAGAGTTCAGACGATGATGCATTGCTTAAGCTAGACAGAATCCGAGATATTATCGATGCATCTAATGCTCCTAGTATTGGTGATGATAATCCTGAAGCATGGCATGTTCAGATATTCCGTTCGATTgattcaaattctgttaagggATTTCCAAAGGATCCAAAAGATGCATCAAGCAAGAACCTAGTATGTGGGAAGAATGTGCTGATTGACATGAGCATACATACAGCATATGTAAAGGCCATTCGTGCTGCACAACATTACATTTATATAGAGAATCAATATTTCATTGGGTCTTCATATAATTGGAGTCAACATAAAGACCTTGgtgctaataatttaattcctatGGAAATTGCGCTGAAGATTGCTGCAAAGATAAGGGCAAATGAGAGATTTGCAGTGTACATTGTTATTCCAATGTGGCCAGAGGGTGTTCCAACAGGAGCTGCCACCCAAAGAATTCTATTTTGGCAGCATAAAACGATGCAAATGATGTACGAGACAATTTACAAGGCTTTGGTTGAAGTTGGGCTTGAAGCAGCATTCTCTCCACAAGACTATTTGAACTTTTTCTGTCTTGGCAATCGGGAGGCCGTAGATATGTATGAGAATATCACTGTGACTGGAACTCCTCCACCAGCAAATAGTCCACAAGCAATTAGTAGAAACAATCGACGTTTCATGATTTATGTTCATTCAAAAGGCATGATAGTTGATGATGAATATGTCATATTGGGGTCTGCGAACATCAACCAGCGCTCTATGGAAGGAACAAGGGACACCGAGATTGCAATGGGAGCCTACCAACCTCATCATACCTGGGCAAGAAGACAGTCTTATCCACGTGGACAGATTCATGGATATAGGATGTCACTTTGGGCCGAACATACGGGTACTATTGAAGACTTCTTCTTACAACCAGAGAGCCTGGAATGTGTTAGAAGGGTTAGAACAATGGGTGAACTAAACTGGAAACAATTTTCAGCTAATGATGTAACAGAGATGAGAGGGCATCTGCTCAAGTACCCGGTAGAAGTTGATCGAAAGGGTAAGGTAAGATCCCTTCCTGGCCAAGAAGAGTTCCCGGATGTAGGAGGAAAGATAGTAGGATCATTTATTGCCATTCAGGAGAATCTAaccatttga 3045 0.4332 MDNYGSSQHPYGYPNPYLSPGNTPPYPPPPDPYAPTPYAYPPNHQHSFNYSYPPPPPPHSSAPYSSHMDYSYPPPPPPPHSSAPYSGHIDYSYPPPPPPTTSSAGSYDFHWPQPPHTYPYPHQAPPEWSVTAGGVSQTSDSFNPPHSSAYPPLDDLMSNVRLSDNNQPSAPPLTHSVSIPNQEKRNEFYGYPSHSSSSLDQGDPSRLSASSDDSVHSQSLQIVPAQHKGSLRVLLLHGNLDIWVHGAKKPSKHGHVPQDFGGYVWEIACENPVWEQHFNVPVAHHAAEVHFVVKDSDVVGSQLIGIVAIPVEQIYSGEKVQGTYPILNSNGKPCKPGAVLRVSIQYIPMERLIMYHQGVGAGPDYIGVPSTYFPLRKGGTVTLYQDAHVPDGCLPNIVLDHGMYYAHGKCWHDIFDAIRQAQRLVYITGWSVWHKVRLVRDAGHASNFTLGDLLRTKSQEGVRVLLLVWDDPTSRSILGYKMDGVMATHDEETRRFFKHSSVQVLLCPRIAGKRNSWAKQKEVGTIYTHHQKTVIVDADAGNNKRKIVAFVGGLDLCDGRYDTPHHPLFRTLQTLHKDDYHNPTFTGNTGGCPREPWHDLHSKIDGPAAYDVLKNFEERWLRAAKPNGIKKLKSSDDDALLKLDRIRDIIDASNAPSIGDDNPEAWHVQIFRSIDSNSVKGFPKDPKDASSKNLVCGKNVLIDMSIHTAYVKAIRAAQHYIYIENQYFIGSSYNWSQHKDLGANNLIPMEIALKIAAKIRANERFAVYIVIPMWPEGVPTGAATQRILFWQHKTMQMMYETIYKALVEVGLEAAFSPQDYLNFFCLGNREAVDMYENITVTGTPPPANSPQAISRNNRRFMIYVHSKGMIVDDEYVILGSANINQRSMEGTRDTEIAMGAYQPHHTWARRQSYPRGQIHGYRMSLWAEHTGTIEDFFLQPESLECVRRVRTMGELNWKQFSANDVTEMRGHLLKYPVEVDRKGKVRSLPGQEEFPDVGGKIVGSFIAIQENLTI 1014
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2693 1014 Pfam C2 domain 270 326 IPR000008 -
Ssu4g2693 1014 PANTHER PHOSPHOLIPASE D 268 1014 IPR015679 -
Ssu4g2693 1014 PANTHER PHOSPHOLIPASE D ALPHA 1 268 1014 - -
Ssu4g2693 1014 PANTHER PHOSPHOLIPASE D ALPHA 1 147 249 - -
Ssu4g2693 1014 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 270 349 IPR035892 -
Ssu4g2693 1014 PANTHER PHOSPHOLIPASE D 147 249 IPR015679 -
Ssu4g2693 1014 SUPERFAMILY beta-sandwich domain of Sec23/24 24 965 - -
Ssu4g2693 1014 MobiDBLite consensus disorder prediction 69 83 - -
Ssu4g2693 1014 Gene3D C2 domain 268 350 IPR035892 -
Ssu4g2693 1014 Gene3D Endonuclease Chain A 401 644 - -
Ssu4g2693 1014 Pfam Phospholipase D Active site motif 526 560 IPR001736 GO:0003824
Ssu4g2693 1014 Pfam Phospholipase D Active site motif 861 887 IPR001736 GO:0003824
Ssu4g2693 1014 ProSiteProfiles C2 domain profile. 212 324 IPR000008 -
Ssu4g2693 1014 MobiDBLite consensus disorder prediction 17 39 - -
Ssu4g2693 1014 MobiDBLite consensus disorder prediction 48 62 - -
Ssu4g2693 1014 Gene3D Endonuclease Chain A 674 914 - -
Ssu4g2693 1014 MobiDBLite consensus disorder prediction 130 146 - -
Ssu4g2693 1014 MobiDBLite consensus disorder prediction 1 213 - -
Ssu4g2693 1014 SMART pld_4 860 887 IPR001736 GO:0003824
Ssu4g2693 1014 SMART pld_4 525 560 IPR001736 GO:0003824
Ssu4g2693 1014 Pfam Phospholipase D C terminal 934 1004 IPR024632 -
Ssu4g2693 1014 MobiDBLite consensus disorder prediction 159 213 - -
Ssu4g2693 1014 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 525 560 IPR001736 GO:0003824
Ssu4g2693 1014 SUPERFAMILY Phospholipase D/nuclease 410 624 - -
Ssu4g2693 1014 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 860 887 IPR001736 GO:0003824
Ssu4g2693 1014 SUPERFAMILY Phospholipase D/nuclease 648 946 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2693 Ssu-Chr4 68447369 68456492 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g2693 59 1014 Phospholipase D Gene Family (Wang group) AT2G42010 66.412 0.0 1363
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2693 K01115 - gmx:100805294 1675.22