Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2687 ATGTTGACCAATCAAGAAGACCGACGAAGGCTACCGTCTCCCTCATATGTTAATATGGCCCCTTCAACAGCCTTATTACCCTTTCTCCTTTTCCTTTGCCATTTTCAACATTCCTCATCGCTATCCCTCTCCGTGGAGAAACCCGACAAGGATGTCATAGTTTCGTCACCGAAGGGAACGTTCACCGCAGGGTTCACAGCCGTAGGGGAAAATGCCTACTGCTTCGCCATATGGTTCACGCAGCCTCAAAAAACCATCGTTTGGATGGCCAATCGTGACCAACCGGTGAACGGAAAACGGTCCACCCTTTCCCTTCTAAAGACCGGTAACCTCGTCCTATCCGACACGGGGCAGCTCGACGTTTGGGCCACCAACACCCTCTCTTCGAATCCGCTGGAGTTGCATCTGTACGACACCGGCAACCTCGTACTCCGGGAACAAAACAATAAGAGCTCTGTTCTGTGGCAGAGCTTTGATTCTCCAACGGATACGCTCCTTCCTGGGCAGATTCTCACTGGTGGCAGGTTCACGAAGCTTGTTTCCTCAAGAAGTGAGGGAAACTATTCCTCTGGTTTTTACAAGCTCTTCTTCGACAACGACAATGTTTTACGTCTTCAATATGAGGGCCCTCAAGTTTCAAGTGTTTACTGGCCAGATCCGTGGTTGACGAGCAATAACGATTTTGGTGGTAACGGTAGATCCACGTACAATAGTAGCAGAGTTGCAGTGTTAGATGACTTAGGCAAATTCGATGCTTCCGATCGTTTTAGTTTCAAGACAATTGACTATGGGACACTCCTTCAACGAAGATTGACCCTTGATCATGATGGCAATGTTCGTGTGTATAGCAGAAAAAACGATCAAGAAAATTGGTCAATATCGGGGCAATTTAAATCAAAACCTTGTTTCATTCACGGGATTTGTGGACCCAACAGTATCTGCAGTTATGAACCAGCAAGTGGTAGAAAGTGTATGTGTCTTGAAGGGTATAGTTGGATTGATAGTCAAGATTGGTCTCTAGGTTGCAAACCGAATTTCCAACCTTCGTGTGACAACAAGACAAAATATCGGTTTATATTCTATGATGAAGTGGATTTTTACGGATACGATTATGGGTtcacatataaaaattacaccTACAACCAATGTGAGCAATTGTGTTTGGTACTGTGCGAGTGTATGGGCTTTCAGTATTCCGATGGGGTGGATAATCTTTTTTGGTGCTTCCCAAAGATGCAGTTGTTAAATGGGTATCGTTCACCTGGCGACCGAGGACAATTTTTCTTGCGTTTGCCAAAAAACATTGCTCAAGAAAATCACATCCAAAACAATGATGGCTTGGTTTGTTCGAGAAATGCAACAGAACTATTAAAAAGACCATATGTGAAAGGCAAGGATAATGGGTCGGTGAAGATCATGCTTTTGTTTGCAATTGGGCTGGGAGGGTTTGAAGTCTTGTGCATCATTGCAGTGTGGTGTTTCCTATTTACGAGTAGCAACCATATGGTTAGTGCAAACCAACAAGGGTATGTTCTTGCAGCAGCTATGGGGTTCCGAAGGTATACTTACTCTGAACTAAAACAAGCCACAAAAGGTTTCAATGAAGAAATTGGAAGGGGTGCTGGGGGGATTGTGTATAAGGGTTTGTTACCTGATAATCGAGTTGTAGCAATAAAAAAGCTGCATGAATTTGCAGACCAAGGAGAGAGGGAGTTCCTTACTGAAGTGAGCATCATTGGAAGGCTTAACCACATGAACTTAATTGGCATGTGGGGATATTGTGCAGAAGGCAAGCACAGGATGTTGGTTTATGAGTACATGGAAAATGGCTCTTTGGCTAATAATCTCCCATCAAATGCACTTGATTGGAGTAAGAGGTACAACATTGCTGTGGGAATGGCACAGGGTTTGGCCTACTTGCATGAAGAGTGCTTAGAGTGGATTTTGCATTGTGATATAAAGCCCCAAAACATACTTCTTGACTCTGATTACCAGCCCAAGGTAGCGGATTTTGGCTTGTCCAAGCCATTGAATAGAAACAACCTCAACAACTCAAGCTTCTCGAGGATAAGAGGGACAAGGGGTTACATGGCACCAGAATGGGTTTTCAACTTGCAAATCACTTCCAAGGTGGATGTTTATAGCTATGGAATTGTTGTGTTGGAGATGATAACTGGGAGGAGTCCAATGACAGGTGTCCAAGTCACGGAACTAGGAGTAGAGTCAAATAATGAGAGGTTGGCAACATGGGTGAAGGAGAAAAGGAGGAAAGTACCAGAAGTGGCTTGTTGGGTGGAGCAAATTGTTGACCCCACTTTGGGATCAGATTATGACATGAAGCAGATGGAGATATTGGCAACAGTGGCTTTGGAATGTGTGGAGGAAGAGAAAGACGTGAGACCTAGCATGAGTCAAGTCATTGAGAGGCTGCAAAGTCATGACTCATGA 2448 0.4412 MLTNQEDRRRLPSPSYVNMAPSTALLPFLLFLCHFQHSSSLSLSVEKPDKDVIVSSPKGTFTAGFTAVGENAYCFAIWFTQPQKTIVWMANRDQPVNGKRSTLSLLKTGNLVLSDTGQLDVWATNTLSSNPLELHLYDTGNLVLREQNNKSSVLWQSFDSPTDTLLPGQILTGGRFTKLVSSRSEGNYSSGFYKLFFDNDNVLRLQYEGPQVSSVYWPDPWLTSNNDFGGNGRSTYNSSRVAVLDDLGKFDASDRFSFKTIDYGTLLQRRLTLDHDGNVRVYSRKNDQENWSISGQFKSKPCFIHGICGPNSICSYEPASGRKCMCLEGYSWIDSQDWSLGCKPNFQPSCDNKTKYRFIFYDEVDFYGYDYGFTYKNYTYNQCEQLCLVLCECMGFQYSDGVDNLFWCFPKMQLLNGYRSPGDRGQFFLRLPKNIAQENHIQNNDGLVCSRNATELLKRPYVKGKDNGSVKIMLLFAIGLGGFEVLCIIAVWCFLFTSSNHMVSANQQGYVLAAAMGFRRYTYSELKQATKGFNEEIGRGAGGIVYKGLLPDNRVVAIKKLHEFADQGEREFLTEVSIIGRLNHMNLIGMWGYCAEGKHRMLVYEYMENGSLANNLPSNALDWSKRYNIAVGMAQGLAYLHEECLEWILHCDIKPQNILLDSDYQPKVADFGLSKPLNRNNLNNSSFSRIRGTRGYMAPEWVFNLQITSKVDVYSYGIVVLEMITGRSPMTGVQVTELGVESNNERLATWVKEKRRKVPEVACWVEQIVDPTLGSDYDMKQMEILATVALECVEEEKDVRPSMSQVIERLQSHDS 815
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2687 815 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 21 814 - -
Ssu4g2687 815 Gene3D Transferase(Phosphotransferase) domain 1 607 815 - -
Ssu4g2687 815 ProSiteProfiles Protein kinase domain profile. 531 815 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu4g2687 815 CDD PAN_AP_plant 346 432 - -
Ssu4g2687 815 SMART serkin_6 531 785 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu4g2687 815 ProSitePatterns Serine/Threonine protein kinases active-site signature. 648 660 IPR008271 GO:0004672|GO:0006468
Ssu4g2687 815 SUPERFAMILY Protein kinase-like (PK-like) 513 810 IPR011009 -
Ssu4g2687 815 Gene3D - 38 160 IPR036426 -
Ssu4g2687 815 CDD STKc_IRAK 537 811 - -
Ssu4g2687 815 Gene3D Phosphorylase Kinase; domain 1 497 606 - -
Ssu4g2687 815 Pfam D-mannose binding lectin 85 172 IPR001480 -
Ssu4g2687 815 ProSiteProfiles Bulb-type lectin domain profile. 38 157 IPR001480 -
Ssu4g2687 815 CDD B_lectin 55 161 IPR001480 -
Ssu4g2687 815 PANTHER SERINE/THREONINE KINASE, PLANT-TYPE PROTEIN 21 814 - -
Ssu4g2687 815 SUPERFAMILY alpha-D-mannose-specific plant lectins 86 179 IPR036426 -
Ssu4g2687 815 ProSitePatterns Protein kinases ATP-binding region signature. 537 560 IPR017441 GO:0005524
Ssu4g2687 815 Pfam Protein kinase domain 534 807 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu4g2687 815 SMART blect_4 44 161 IPR001480 -
Ssu4g2687 815 PIRSF SRK 13 815 IPR024171 GO:0004674
Ssu4g2687 815 Pfam S-locus glycoprotein domain 265 330 IPR000858 GO:0048544
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2687 Ssu-Chr4 68280180 68284474 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g2687 494 812 Trihelix Transcription Factor Family AT5G38560 39.506 4.66e-67 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Ssu4g2687 Pkinase 2.7e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2687 - - gmx:100806357 1356.27