Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2685 ATGGGCTTTCAGTATACCTTTGCGGCCGATAATGGTCTCTTTTGGTGTTACCCAAAAACGCAGTTGCTAAATGGACATCGTTCACCTGGTTTCACAGGGCAAATTTTCTTGCGTTTGCCGAAAAGCAGTGCTCAGGAGAACCACATGCAAGTTAATGATGGTTTGGTTTGTTCGAGAAATGCAGCAAAACTGCTAGAAAGACTATACGTGAAAGGCAAGGAAAATGGGTCGGTGAAGTTCATGCTTTGGTTTGCAATTGGTTTGGGAGGGTTTGAGGTTGTGTGCATCTTTATGGTGTGGTGTTTCCTCTTTAGGAGTAGCAACCACTTGGTTAGTGCAGACCAACAAGGGTACGTTCTTGCAACAGCTACGGGGTTCAGAAGGTACACTTACTCTGAACTAAAACAAGCCACAAAAGGCTTCAGTGAAGAGATTGGAAGGGGTGCTGGGGGGACGGTGTACAAGGGTGTGTTATCAGATAACCGAGTTGCAGCAATTAAAAAACTTCATGAATTTGTAGACCAAGGAGAGAGTGAGTTCCTTACTGAAGTGAGCATCATTGGAAGGCTTAACCACATGAACTTAATTGGCATGTGGGGGTATTGTGTAGAAGGAAAGCACAGGATGTTGGTTTATGAGTACATGGAAAATGGCTCTCTGGCTAATAATCTCCCATCAAATGCACTTGATTGGAGTAAGAGGTACAACATTGCTGTGGGAATGGCAAAGGGTTTGGCCTACTTGCATGAAGAGTGCTTGGAGTGGATTTTGCATTGTGATATAAAGCCCCAAAACATACTTCTTGACTCTGACTACTATCCTAAGGTGGCAGATTTTGGCTTGTCTAAGCCATTGAATAGAAACAACCTCAACAACTCAAGCTTCTCAAGGATAAGAGGGACAAGGGGTTACATGGCACCGGAATGGGTTTTCAACTTGCAAATCACCTCCAAGGTGGATGTTTATAGCTATGGAATTGTTGTGTTGGAGATGATAACTGGGAGGAGTCCATTGACAGGTGTCCAAGTCACGGAACTAGGAGCAGAGTCCAATAATGAGAGGTTGGCAACATGGGTAAGGGAGAAAAGGAGGAAAGCACTAAAAGGGGCATGTTGGGTGGAACAAATTGTTGACCCCACTTTGGGATCAGATTATGACTTGAAGCAGATGGAGATATTGGCAACAGTGGCTTTGGAATGTGTAGAGGAAGAGAAAGACGTGAGACCTAGCATGAGTCAAGTTGTTGAGAGGCTCCAAAGTCATGACTCATGA 1272 0.4434 MGFQYTFAADNGLFWCYPKTQLLNGHRSPGFTGQIFLRLPKSSAQENHMQVNDGLVCSRNAAKLLERLYVKGKENGSVKFMLWFAIGLGGFEVVCIFMVWCFLFRSSNHLVSADQQGYVLATATGFRRYTYSELKQATKGFSEEIGRGAGGTVYKGVLSDNRVAAIKKLHEFVDQGESEFLTEVSIIGRLNHMNLIGMWGYCVEGKHRMLVYEYMENGSLANNLPSNALDWSKRYNIAVGMAKGLAYLHEECLEWILHCDIKPQNILLDSDYYPKVADFGLSKPLNRNNLNNSSFSRIRGTRGYMAPEWVFNLQITSKVDVYSYGIVVLEMITGRSPLTGVQVTELGAESNNERLATWVREKRRKALKGACWVEQIVDPTLGSDYDLKQMEILATVALECVEEEKDVRPSMSQVVERLQSHDS 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2685 423 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 1 422 - -
Ssu4g2685 423 Pfam Protein kinase domain 142 415 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu4g2685 423 Gene3D Phosphorylase Kinase; domain 1 105 214 - -
Ssu4g2685 423 SMART serkin_6 139 420 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu4g2685 423 CDD STKc_IRAK 145 419 - -
Ssu4g2685 423 ProSitePatterns Protein kinases ATP-binding region signature. 145 168 IPR017441 GO:0005524
Ssu4g2685 423 ProSitePatterns Serine/Threonine protein kinases active-site signature. 256 268 IPR008271 GO:0004672|GO:0006468
Ssu4g2685 423 Gene3D Transferase(Phosphotransferase) domain 1 215 423 - -
Ssu4g2685 423 SUPERFAMILY Protein kinase-like (PK-like) 122 418 IPR011009 -
Ssu4g2685 423 ProSiteProfiles Protein kinase domain profile. 139 423 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu4g2685 423 PANTHER SERINE/THREONINE KINASE, PLANT-TYPE PROTEIN 1 422 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2685 Ssu-Chr4 68254784 68256055 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g2685 129 420 Trihelix Transcription Factor Family AT5G38560 43.098 3.26e-71 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Ssu4g2685 Pkinase 1.2e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2685 - - gmx:100806357 788.875