Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2679 ATGGTGAGAGGAAAGACTCAGATGAAGCGTATAGAGAACGCCACAAGCCGGCAAGTAACTTTCTCAAAGCGGCGTAATGGGTTGCTGAAGAAGGCGTTTGAGCTATCAGTTCTGTGTGATGCTGAGGTTGCTCTTATCATCTTCTCTCCTAGAGGGAAGCTTTATGAATTTGCTAGCTCCAGCATGCAGGAGACAATTGAACGATATCGCAGACATACCAAGAATGATACTCCAGCTACACTCAGATCAGTTGAACAAAATATGCAGCATATGAGGCAAGAAGCAGCAAGCATGATGAAGAAGATTGACCTTCTTGAAGCTTCAAAAcgGAAATTCTTAGGAGAAGGTTTGGGGGCATGCTCCATTGAGGAACTGCAACGGATTGAACAACAGTTGGAGAGGAGTTTAAGTAATATTCGAGCAAGAAAGaCCCAGGTTTTCAAGGAACAAATTGAGCaactaaaagaaaagGAAAAAGCCCTACTAGATGAAAATGCCAGGCTCTCTGAGAAGCATGGCAGTCCGTCCACAGCCAGTAGCACCAAAAGATCtgaatga 558 0.4283 MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFASSSMQETIERYRRHTKNDTPATLRSVEQNMQHMRQEAASMMKKIDLLEASKRKFLGEGLGACSIEELQRIEQQLERSLSNIRARKTQVFKEQIEQLKEKEKALLDENARLSEKHGSPSTASSTKRSE 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2679 185 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Ssu4g2679 185 Gene3D - 13 111 IPR036879 GO:0003677|GO:0046983
Ssu4g2679 185 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Ssu4g2679 185 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Ssu4g2679 185 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Ssu4g2679 185 SUPERFAMILY SRF-like 3 89 IPR036879 GO:0003677|GO:0046983
Ssu4g2679 185 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Ssu4g2679 185 PANTHER MADS BOX PROTEIN 1 179 - -
Ssu4g2679 185 Coils Coil 122 171 - -
Ssu4g2679 185 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Ssu4g2679 185 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Ssu4g2679 185 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Ssu4g2679 185 MobiDBLite consensus disorder prediction 162 185 - -
Ssu4g2679 185 MobiDBLite consensus disorder prediction 171 185 - -
Ssu4g2679 185 PANTHER MADS-BOX PROTEIN SOC1 1 179 - -
Ssu4g2679 185 CDD MADS_MEF2_like 3 76 IPR033896 GO:0000977|GO:0045944
Ssu4g2679 185 Coils Coil 81 108 - -
Ssu4g2679 185 Pfam K-box region 85 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2679 Ssu-Chr4 68136623 68169123 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g2679 1 159 MADS-box Gene Family AT2G45660 80.503 4.62e-89 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Ssu4g2679 K-box 1.8e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2679 - - gmx:100807963 281.182