Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2678 atgggtAGAGGGAGGGTTGAGCTGAAGAGGATAGAGAACAAAATCAACCGCCAAGTTACTTTCTCAAAAAGAAGGAACGGTTTGCTCAAGAAAGCCTATGAGCTCTCagttctctgtgatgctgagGTTGCCCTCATCATTTTCTCAAGCCGTGGGAAGCTCTATGAATTTGGAAGTGTTGGCATTACCAACACTATTGAGCGATACCAACGTTGCTCTTTTACTCCTCAAGATGAACACGTTGAATGTGAAACTCAGAGCTGGTACCAAGAGGTGTCCAAGTTAAAGGCTAAGTATGAGTCTCTTCAAAGGACCCAGAGGCATTTGCTTGGGGAAGATCTTGGACCATTAAACATAAAGGAGCTGCAGAATCTTGAGAAACAACTTGAAGGAGCTTTAGCACAAGCTAGGCAAAGGAAGACACAAATTATGATTGAACAAATGGAAGAGCTTCGCAGAAGGGAGCGCCATCTTGGAGACATGAATAAGCAACTTAGACTCAAGCTTGAAGCAGAGGGATTTAATCTTAAAGCTATGGAAAGCCTGTGGAGCTCTACTTCAGCTGCTGGAAATAGCGGCTTTCCCTTTCAGCCTGCTCAAACAAACCCTATGGACTACCAGGCAGAACCCTTTTTGCAAATAGGGTACCATCAATATGTTCAAGCTGAGGCATCTAATGTTCCAAAGAGCATGGCTTGTGAGACTAACTTCATGCAGGGATGGATCCTTTGA 732 0.4262 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSVGITNTIERYQRCSFTPQDEHVECETQSWYQEVSKLKAKYESLQRTQRHLLGEDLGPLNIKELQNLEKQLEGALAQARQRKTQIMIEQMEELRRRERHLGDMNKQLRLKLEAEGFNLKAMESLWSSTSAAGNSGFPFQPAQTNPMDYQAEPFLQIGYHQYVQAEASNVPKSMACETNFMQGWIL 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2678 243 ProSiteProfiles K-box domain profile. 85 175 IPR002487 GO:0003700|GO:0005634|GO:0006355
Ssu4g2678 243 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Ssu4g2678 243 Coils Coil 119 142 - -
Ssu4g2678 243 Pfam K-box region 84 169 IPR002487 GO:0003700|GO:0005634|GO:0006355
Ssu4g2678 243 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Ssu4g2678 243 SUPERFAMILY SRF-like 2 80 IPR036879 GO:0003677|GO:0046983
Ssu4g2678 243 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Ssu4g2678 243 Gene3D - 13 82 IPR036879 GO:0003677|GO:0046983
Ssu4g2678 243 Coils Coil 148 168 - -
Ssu4g2678 243 CDD MADS_MEF2_like 2 73 IPR033896 GO:0000977|GO:0045944
Ssu4g2678 243 PANTHER MADS BOX PROTEIN 1 229 - -
Ssu4g2678 243 PANTHER MADS-BOX TRANSCRIPTION FACTOR 17 1 229 - -
Ssu4g2678 243 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Ssu4g2678 243 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Ssu4g2678 243 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Ssu4g2678 243 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2678 Ssu-Chr4 68108309 68114486 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g2678 1 243 MADS-box Gene Family AT2G45650 65.873 9.30e-116 330
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Ssu4g2678 K-box 2.2e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2678 K09264 - gmx:100820061 454.907