Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2649 ATGCCATCGCGTCCTCCGCCGCCTTCCCCTACCGCGGCGGCCTCCCACCACCGCGGCGAGATAATCCTCTGCGGCGCCGTGGCCGGGTTGCTCCTCCTCGCGGCGCTGATAGTCTCCGTGACGATCTTCCTGTACCGCAAGCTCTCCTACAACCGAACGGCGCCGTTCGAGCACAGCCAGCGGCGGTTCTCGTACTCCGTCCTCCGCCGCGCGACGAGCTCGTTCTCGCCCTCCACGAAGCTCGGCCACGGAGGGTTCGGTTCGGTCCACAAGGCGACGCTTCCGTCGGGCCAGGCCGTGGCGCTGAAGGTGATGGACTCGCCCGGCTCGCTCCAGGGAGAGAGGGAGTTCCACAACGAGCTGGCGCTGTGTTCGAATCTCAGGTCCCCGTTCATCATCTCGCTTCTCGGCTTTTCGTCGGACCGGCGCGGTCGGAAGCTGGTCCTGGTCTACGAGCTGATGCCGAACCGGAGCCTGCAGGACGCGCTTCTGGACAGGCGGTGTCCGGAGCTGATGGGCTGGGGGAAGCGGTTCGACGTCGCCGTTTCGGTGGCGATGGGTTTGGAGTACTTGCATCACGCGTGCGACCCGCCCGTGATCCACGGGGACATCAAGCCCAGTAATGTCTTGCTGGACCGGGAGTTTCGGGCCAAGATTGGGGATTTTGGGCTCGCTAGGGTTAAGACGGTGGAGGATCTGGGAATGGAGATGGTGGACGAggatgagaagaagaagaaggaaggggTTGAGGTTGAGGAGTTTGGTGTTTTGGAGGAGGGAGAGAGTGTGGTGGACGTTGAGCGTTCGCCGGAGAGTTGTCCGGTGAGGGCTGTGGATTATCCCGACGCGTCGCCGGCGGGGGGTGATAAGTTGAGTGTGGTGTCTGATGGGTGTTTTGAGAGTGTTGATAGTGGGAATGTGAGGAAGAAGGGCGGCGGTGGTTCGGGGAGGGATTGGTGGTGGAAGCAGGAGAGTGGGGGAGGTGGGGAATCGGGGAGGGTGAAGGATTATGTGATGGAGTGGATCGGGAGTGAGATAAAGAAGGAGAGGCCCAAGAGTGAGTGGGTTCATTcgtgttcttcttcttctcctaaggtggagaatgagaatgagaatgagaatgagaagaagaataagaagaagaagaagaatgagaaGAAGCAGAGGAGGAGGTTGGATTGGTGGGCCTCACTTGATGAGGAGAGGGTTGGTGTGAAGGTGAAGGTGAAGGTGGTGAGTAAGAAGAGTAGGAAGCCGAGGGAGTGGTGGAAGGAGGAGTTTTGCGAGGAGTTGTCGAAGAAGAgtaggaagaagaagaggggtGTGGAGTGGTGGCAGAGGGAGGAGGAAGGGGTGGAgcagaagaggaagaggaagagtaAGGGGAGTATTGATTGGTGGTTGGACGGTTTGGGTGGGGAGAGTGAGAtgaggaataataataataataataataatgggagGAGGAATAGCCAGGATTGGGTTAGTGGGGATGTGCCGAAGAGTGGTGGGATTAGTAGCACTCCCAGCATGAGAGGGACTGTGTGTTACATTGCTCCTGAGTATGGTGGTGGGGGGCAGTTGTCTGAGAAGTGCGATGTGTATAGTTTTGGGGTTCTGCTTTTGGTTCTGGTGGCCGGGAGGCGGCCGCTGCAGGTGACCGCCTCGCCGATTTCCGAGTTTGAGAGGGCCAATTTGATTTCCTGGGCCAGGCAGCTTGCTCACAATGGGAGGCTCTTGGACCTTGTTGACACTTCTATTCATTCCTTGGATAAGGAGCAGGCGCTGCTCTGCATCACCATTGCCTTGTTGTGTTTGCAGAGGTCACCGGCAAAGAGGCCTTCCATGAGGGAGGTTGTGGGGATGCTTAGTGGGGAAGCTGAGCCACCACACTTGCCGTTTGAGTTCTCACCGTCGCCGCCTTCGAATTTCCTGTTCAAGGCGCGGAAGAAGGCTCGGTGA 1962 0.5377 MPSRPPPPSPTAAASHHRGEIILCGAVAGLLLLAALIVSVTIFLYRKLSYNRTAPFEHSQRRFSYSVLRRATSSFSPSTKLGHGGFGSVHKATLPSGQAVALKVMDSPGSLQGEREFHNELALCSNLRSPFIISLLGFSSDRRGRKLVLVYELMPNRSLQDALLDRRCPELMGWGKRFDVAVSVAMGLEYLHHACDPPVIHGDIKPSNVLLDREFRAKIGDFGLARVKTVEDLGMEMVDEDEKKKKEGVEVEEFGVLEEGESVVDVERSPESCPVRAVDYPDASPAGGDKLSVVSDGCFESVDSGNVRKKGGGGSGRDWWWKQESGGGGESGRVKDYVMEWIGSEIKKERPKSEWVHSCSSSSPKVENENENENEKKNKKKKKNEKKQRRRLDWWASLDEERVGVKVKVKVVSKKSRKPREWWKEEFCEELSKKSRKKKRGVEWWQREEEGVEQKRKRKSKGSIDWWLDGLGGESEMRNNNNNNNNGRRNSQDWVSGDVPKSGGISSTPSMRGTVCYIAPEYGGGGQLSEKCDVYSFGVLLLVLVAGRRPLQVTASPISEFERANLISWARQLAHNGRLLDLVDTSIHSLDKEQALLCITIALLCLQRSPAKRPSMREVVGMLSGEAEPPHLPFEFSPSPPSNFLFKARKKAR 653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2649 653 PANTHER OS07G0586332 PROTEIN 1 653 - -
Ssu4g2649 653 Gene3D Phosphorylase Kinase; domain 1 39 153 - -
Ssu4g2649 653 MobiDBLite consensus disorder prediction 631 653 - -
Ssu4g2649 653 MobiDBLite consensus disorder prediction 303 333 - -
Ssu4g2649 653 Gene3D Transferase(Phosphotransferase) domain 1 154 249 - -
Ssu4g2649 653 Gene3D Transferase(Phosphotransferase) domain 1 485 629 - -
Ssu4g2649 653 Coils Coil 363 392 - -
Ssu4g2649 653 SUPERFAMILY Protein kinase-like (PK-like) 49 641 IPR011009 -
Ssu4g2649 653 MobiDBLite consensus disorder prediction 474 507 - -
Ssu4g2649 653 Pfam Protein kinase domain 78 227 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu4g2649 653 Pfam Protein kinase domain 508 620 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu4g2649 653 ProSitePatterns Protein kinases ATP-binding region signature. 81 103 IPR017441 GO:0005524
Ssu4g2649 653 MobiDBLite consensus disorder prediction 353 388 - -
Ssu4g2649 653 MobiDBLite consensus disorder prediction 475 507 - -
Ssu4g2649 653 PANTHER OS07G0586332 PROTEIN 1 653 IPR044576 -
Ssu4g2649 653 SMART serkin_6 75 623 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu4g2649 653 ProSiteProfiles Protein kinase domain profile. 75 634 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu4g2649 653 ProSitePatterns Serine/Threonine protein kinases active-site signature. 199 211 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2649 Ssu-Chr4 67435633 67437594 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g2649 501 623 Receptor kinase-like Gene Family AT3G58690 37.209 6.71e-14 72.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XI Ssu4g2649 Pkinase 8.6e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2649 - - gmx:100814933 978.393