Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2645 ATGACGACGGGCGCAGGGAAGGAGAGTAAGACACAGTCTTGTTGCATTTCCCACGAATTCTTCCGAATAGCGTCCGCAAACCCTAACAAAATCGCGGTTATTCACGCTTCCGGCGTGGCCCGCCTTTCCAGAGAGTTTCGCCGCGAAAATTCTACCGCCCCCGACTTCAACGGAGACATTGCCACGCTCTTAGAAAAGCGCGTCGAATGCACGTCTCCGCCACTGTACCATGGGGACCGCTGCTTCACTTACTCTCATGTCTTGAACGCCGTTCGTTCCCTCGGCTCCCGCCTCCGCTCTATCCTGCTTGGTGCGGATGACTCACACTTGATCACAGCCCAATCTCAAGGTAACGATGGTGTCAACCATAAAGAAGGAACTATATGGACACCTGAGTCCTTGGAAACTGTCATGGCTAGTGAAGAGGCAATGGCTGAATCAAGTAAAGAGTATAGGCCAAAGATAGTGGGGATTTATATGCCTCCTTCTGTTGAATATATTGTTGCTGTTCTTTCCGTACTGAGGTGTGGGGAAGCCTTCTTGCCTCTAGATCCTTCTTGGCCAAACGAAAGGATATTATCTGTTGTTTCTTCTTCAAATGTTGATCTCATTATAGGGTCCCCATCTTCTTTTGGTAAAAGTAACTCTGACAACCTTGATGAATCGCATTGGTTGATAAAGTCAATTGGTTGTCCAGTTTTGAATTACTCCATTGACGAAAACCTTCAAGAATGTAGCTGTCCAACAGATTTAGCATGGCCTTGTGCCAATGAAAAGCAAAGATCATTCTGCTATCTGATGTACACGTCTGGATCAACTGGAAAGCCTAAAGGAGTGTGTGGCACCGAACAAGGTCTTTCAAATCGCTTTTTATGGATGCAAGGAATGTATCCTCTGAATGGGCAGGAACTATTGTTGTTTAAGTCATCAGTTAGCTTCGTGGACCACTTGCAGGAATTTCTCAGTGCTATTTTGGCTGCTTGTGTGTTAGTTATTCCTCCTTTCAACGAgctaaaagaaaatacatattcTATAATAGATTTTCTGCAGGCATATTTTGTTAATAGGCTTACAGTTGTTCCATCACTAATGAGGACTATTCTTCCTGGATTGCAAACCCATGCTAACATGTGGATGCGGGTTGAAAATTCACTAAAATTGCTTGTGCTTAGTGGTGAAACTTTTCCTTTGACCTTGTGGGAGATGCTTTCAACTATATTACCAAAGACATCAATCTTGAATTTATATGGAAGTACTGAGGTCTCTGGTGACTGTACATATTTTGATTGCAAGAGGATGCCATTGATTTTGAAGGAAGAAATGCTAACTAGTGTCCCAATAGGTATACCCATTACTAACTGTGATGTGATTCTTCTTGGTGAAAATGGTGCACCAAATGAGGGAGAGCTATATGTTGGTGGTTCTTGCATCTCTAGGGGTTACTATAACGAATCTAATATAATGTCTGATGCATTTGCAAAGTTGCCTCGACATTACAGTTGTGATTCTGTTAATGCTTGCAGAGACCAATTATACTTTAGAACTGGTGATTTAGTCAAACAGTTGCCAAGTGGTGACTTTGTATTTTTGGGAAGAAAAGACCgcattataaaagtcaatggACAGCGTGTTGCCCTGGAAGAAGTTGAAGATTTGCTAAGGGAACATCCATATATAAATGATGCCGCTGTAGTTTGTCGAAATAATCAAGCAGAACTTATGCTTCTTGAAGCCTTTATCATactaaagaaaaaggaaagattgGGTGAATTATTAATACCTGCAATCAGAAGTTGGATGATTAACAAACTTCCATCAGTTGTGCTTCCAAACCGTTTCATCTTTATGGAATCATTTCCTGTGTCGCCTAGTGGTAAGGTTAATTATGACTTGTTGGTTGGCTCAGCATTATTGACAAAGAATGTCAGGGATAAGGTTGGTAACATCGACTGCAACAATCTTCTGAAACTTATTAAAAAGGCCTTTCATGATGCTTTAATGGGTGAAAAAGGTTTCCAATGA 2022 0.408 MTTGAGKESKTQSCCISHEFFRIASANPNKIAVIHASGVARLSREFRRENSTAPDFNGDIATLLEKRVECTSPPLYHGDRCFTYSHVLNAVRSLGSRLRSILLGADDSHLITAQSQGNDGVNHKEGTIWTPESLETVMASEEAMAESSKEYRPKIVGIYMPPSVEYIVAVLSVLRCGEAFLPLDPSWPNERILSVVSSSNVDLIIGSPSSFGKSNSDNLDESHWLIKSIGCPVLNYSIDENLQECSCPTDLAWPCANEKQRSFCYLMYTSGSTGKPKGVCGTEQGLSNRFLWMQGMYPLNGQELLLFKSSVSFVDHLQEFLSAILAACVLVIPPFNELKENTYSIIDFLQAYFVNRLTVVPSLMRTILPGLQTHANMWMRVENSLKLLVLSGETFPLTLWEMLSTILPKTSILNLYGSTEVSGDCTYFDCKRMPLILKEEMLTSVPIGIPITNCDVILLGENGAPNEGELYVGGSCISRGYYNESNIMSDAFAKLPRHYSCDSVNACRDQLYFRTGDLVKQLPSGDFVFLGRKDRIIKVNGQRVALEEVEDLLREHPYINDAAVVCRNNQAELMLLEAFIILKKKERLGELLIPAIRSWMINKLPSVVLPNRFIFMESFPVSPSGKVNYDLLVGSALLTKNVRDKVGNIDCNNLLKLIKKAFHDALMGEKGFQ 673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2645 673 Gene3D - 534 640 IPR045851 -
Ssu4g2645 673 Pfam AMP-binding enzyme C-terminal domain 548 626 IPR025110 -
Ssu4g2645 673 PANTHER EBONY 9 669 - -
Ssu4g2645 673 SUPERFAMILY Acetyl-CoA synthetase-like 73 633 - -
Ssu4g2645 673 Gene3D - 115 533 IPR042099 -
Ssu4g2645 673 Pfam AMP-binding enzyme 155 539 IPR000873 -
Ssu4g2645 673 ProSitePatterns Putative AMP-binding domain signature. 266 277 IPR020845 -
Ssu4g2645 673 CDD A_NRPS 152 632 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2645 Ssu-Chr4 67360591 67375925 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g2645 155 627 Monolignol Biosynthesis Gene Families AT4G19010 22.244 2.43e-15 77.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2645 K00142 - gmx:100820175 1120.92