Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2639 ATGGATGACAACCCGAAACGACAATGGTCCCTCAGCGACTTCGAGATCGGGAAGCCTCTCGGCAAGGGCAAATTCGGCAGAGTCTACGTCGCCAGAGAAATCAAGAGCAAATATGTGGTTGCATTGAAGGTTATTTTCAAGGAGCAACTTGAGAAGTACAGGATTCAGCATCAGCTGAGGAGGGAGATGGAGATTCAGTTGAGTCTCAAGCACCCGAACGTCCTTCGTCTCTATGGTTGGTTTCATGACTCCGAACGCGTCTTCTTGATTCTCGAATATGCTCACAATGGTGAGCTTTATAAGGAGCTAAGCAAAAAGGGTCATTTTAATGAGAAGCAGGCTGCCACGtatattttaagccTCACAAAGGCATTGGCATATTGTCATGAGAAGCATGTTATTCACAGGGATATCAAGCCTGAAAATTTGTTGCTTGACCACGAGGGTCGTCTTAAGATTGCAGACTTTGGTTGGTCGGTACAGTCTAGAAGCAAAAGGCATACAATGTGTGGAACGTTGGATTATTTAGCACCCGAAATGGTAGAAAACAAAGCTCATGATTATGCAGTTGATAACTGGACTCTGGGTATCCTTTGTTATGAGTTCCTTTATGGTGCTCCTCCATTTGAGGCTGAGAGTCAAGTTGATACCTTCAAAAGGATAATGAAGGTTGACCTAAGCTTCGCTTCtactccttatgtttcttcAGAAGCCAAAAATCTTATTAGTCGGCTCCTGGTAAAAGACTCTTCACGAAGGCTCTCACTTCAGAGGATAATGGAGCATCCTTGGATAATCAAGAATGCAAATCCTATGGGTGTCTGCAAGTAG 831 0.4284 MDDNPKRQWSLSDFEIGKPLGKGKFGRVYVAREIKSKYVVALKVIFKEQLEKYRIQHQLRREMEIQLSLKHPNVLRLYGWFHDSERVFLILEYAHNGELYKELSKKGHFNEKQAATYILSLTKALAYCHEKHVIHRDIKPENLLLDHEGRLKIADFGWSVQSRSKRHTMCGTLDYLAPEMVENKAHDYAVDNWTLGILCYEFLYGAPPFEAESQVDTFKRIMKVDLSFASTPYVSSEAKNLISRLLVKDSSRRLSLQRIMEHPWIIKNANPMGVCK 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2639 276 ProSitePatterns Serine/Threonine protein kinases active-site signature. 133 145 IPR008271 GO:0004672|GO:0006468
Ssu4g2639 276 SUPERFAMILY Protein kinase-like (PK-like) 7 269 IPR011009 -
Ssu4g2639 276 ProSitePatterns Protein kinases ATP-binding region signature. 20 47 IPR017441 GO:0005524
Ssu4g2639 276 SMART serkin_6 14 265 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu4g2639 276 ProSiteProfiles Protein kinase domain profile. 14 265 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu4g2639 276 Gene3D Phosphorylase Kinase; domain 1 2 97 - -
Ssu4g2639 276 PANTHER SERINE/THREONINE-PROTEIN KINASE IAL-RELATED 4 275 IPR030616 GO:0004672
Ssu4g2639 276 CDD STKc_Aurora 13 265 - -
Ssu4g2639 276 PIRSF ILK 3 269 - -
Ssu4g2639 276 Pfam Protein kinase domain 14 265 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu4g2639 276 Gene3D Transferase(Phosphotransferase) domain 1 98 273 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2639 Ssu-Chr4 67088775 67091891 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g2639 6 271 CBL-interacting serine-threonine protein kinases AT5G10930 39.560 1.36e-64 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK Aur Ssu4g2639 Pkinase 1.7e-74 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2639 K08850 - gmx:100775802 533.872