LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ssu4g2636	ATGGAAGCTAAGCCTCTTCGAATTGTTCCCCCTTCGCACAACACTTCTGGAGGTGGACCCCAGAAGAAGATTGACATGGGACACGCGATGGAAGGTGGGGGTGGTGTTGTTGATGAGAGAAAGAGGGTTGTTATGGtcaaggaagagaaagagaactCTTCTTCCACTGTTGAACTTCGTCTCGGGGTTGATGCTCATTCTGCACCACAACCACAAGAAGTAAACCATGTGATCACGGAAGCTCAGAGGCGCGAGCTTCACCATCAAGTTTTCATCTTCAACCATTTGGCCTATAAGCTTCCTCTTCCTCATCACCTTGTGCAATTCCCAAGCAATATGTCAGAATACAGTTTCCAGGGTTATGATCGTGGGATCATGCTAGATCCAGAACCTCATAGGTGTAGAAGAACTGATGGAAAGAAATGGAGGTGTAGTAAGAATGTGGTGCCTAATCAGAAGTACTGTGAAAGGCACATGCATAGAGGTCGAAATCGTTCAAGAAAGCCTGTGGAAACATCTCAAGTTAACTCTGCTTTGGCAACAAAGCCTTCTAGCAAGTCACATGCCAAACCAGGCTCAAAgacagaatttgaaatttcaaatgcAAATCTTTTGGCCATGCAACCTAGTGACTCATCTTCCAGTACCCCATCAAGGAGCCTCAGTGTTGTCAATTGCTCATCTTCTAATAATAGGTCGAAAAATAGTGCAAGTTCTGCTGACTACCTCATGGCATTTCCTTCTGCCTCTACGGTGTCCCGTGGCTCCTCTCTTGTCACTGCAGTTGCCCCTAAGGTGTCCACCTTCAGCAGCATGGCATCTGTTGCTTCAGATAACAAAAGTTGTCTAAAGATGTGCCAGAAAGATTACCAGTCCAGGAGCTGTATCAGTAACAACATCAGTATTAGAAATGGTGGGAAAGGAAGCATTGTTGGTGATACTATTACTAATGGCATCTCTACTGGAATAGGCTTCTCCCCAAGGAGTGTTCTTCAAGTGTCTGGTTGCAACCCTTCATACCTCAATGATAGAACAAACATAGAACCTGCACACGGTAGGTGCCGGAGAACAGACGGCAAGAAGTGGCAGTGCAAGAGTGCTATTCTTCCTGGTCAGAAGTACTGTGCCACACACATGCACAGAGGTGCGAAAAAGCGTTGTACAAACCATGAACCAGCAGCTAGTACTACTTGTTCTGCTGTTACCGTTGCGCGGTTGCCGTACTCTTCAGCCACAACCAACATGCAGAAAGCGCATTGTGCAATTCCAAACACAAATCTTTCCATGTCAGTGCTAGCAACTGCACCATTCATACAATGTAATGAGAAAAGCCTCAGTAGCTGTGACACTGATACCACCATCAGTGACACCTTGAATGAGTGTAGCTATGCTTCTTTCTGA	1401	0.4461	MEAKPLRIVPPSHNTSGGGPQKKIDMGHAMEGGGGVVDERKRVVMVKEEKENSSSTVELRLGVDAHSAPQPQEVNHVITEAQRRELHHQVFIFNHLAYKLPLPHHLVQFPSNMSEYSFQGYDRGIMLDPEPHRCRRTDGKKWRCSKNVVPNQKYCERHMHRGRNRSRKPVETSQVNSALATKPSSKSHAKPGSKTEFEISNANLLAMQPSDSSSSTPSRSLSVVNCSSSNNRSKNSASSADYLMAFPSASTVSRGSSLVTAVAPKVSTFSSMASVASDNKSCLKMCQKDYQSRSCISNNISIRNGGKGSIVGDTITNGISTGIGFSPRSVLQVSGCNPSYLNDRTNIEPAHGRCRRTDGKKWQCKSAILPGQKYCATHMHRGAKKRCTNHEPAASTTCSAVTVARLPYSSATTNMQKAHCAIPNTNLSMSVLATAPFIQCNEKSLSSCDTDTTISDTLNECSYASF	466

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ssu4g2636	466	ProSiteProfiles	WRC domain profile.	348	392	IPR014977	-
	Ssu4g2636	466	MobiDBLite	consensus disorder prediction	169	194	-	-
	Ssu4g2636	466	ProSiteProfiles	QLQ domain profile.	77	112	IPR014978	GO:0005524\|GO:0005634\|GO:0006355
	Ssu4g2636	466	PANTHER	-	338	424	IPR031137	GO:0005634\|GO:0006351\|GO:0032502
	Ssu4g2636	466	PANTHER	-	46	250	IPR031137	GO:0005634\|GO:0006351\|GO:0032502
	Ssu4g2636	466	MobiDBLite	consensus disorder prediction	155	194	-	-
	Ssu4g2636	466	ProSiteProfiles	WRC domain profile.	128	172	IPR014977	-
	Ssu4g2636	466	PANTHER	GROWTH-REGULATING FACTOR 9	46	250	-	-
	Ssu4g2636	466	PANTHER	GROWTH-REGULATING FACTOR 9	338	424	-	-
	Ssu4g2636	466	MobiDBLite	consensus disorder prediction	207	237	-	-
	Ssu4g2636	466	Pfam	WRC	129	171	IPR014977	-
	Ssu4g2636	466	Pfam	WRC	349	389	IPR014977	-
	Ssu4g2636	466	MobiDBLite	consensus disorder prediction	1	23	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ssu4g2636	Ssu-Chr4	67053304	67056553	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ssu4g2636	81	405	GRF Transcription Factor Family	AT2G45480	33.333	2.12e-38	143

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ssu4g2636	-		-	gmx:100795050	698.353