Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2633 ATGTCAATTTTTAGAAAGACAAAGCTTTTAGTGGGTGACCTTGTGGCTTTAGCCACAACTTTTCTGCCTGCAGATTCTTTTACTTTACCTTCTCATGATCAATTGACTGCCAGCACATTAAATTCATGGGCAAGTTGTTATGTACAAGATGCCGAACTTGGCAGTTCATCTGaccaaaatgaaatgaaaattccCTCGGAATTCTCTTTGTCTGGCAACACTGCTCATGATTCAGGAAGAGGCGGTGCAGCCATTCTTAATAGAGAAGCTTTTGCATTCAACATTCAAAGATATACGCTTGATTTAATTTTACCAACAAATATCCTGGGCGACATCAAGTGCGAAATCTTCTGCGACGAGGTCCCCAAGTCCTCCGAGAATTTTTTAGCGCTATGTGCAAGTGGTTACTATGATGGGACTGTATTTCACCGCAACATTAAAGGTTTTATGATTCAAGGTGGTGACCCAACTGGAACTGGCAAAGGAGGGACCAGTATATGGGGCAAGAAATTTAACGATGAGATAAGAGAGTCTCTCAAGCACAATGCAAGGGGAATATTGGCAATGGCAAACAGTGGTCCAAATACTAATGGAAGTCAATTCTTCATTACTTACGCAAAGCAGCCACATTTAAATGGACTATACACTGTGTTTGGCAAAGTAATTCATGGATTTGAAGTTCTTGATCTCATGGAAAAGACTCAAACAGGGGCAGGGGACCGACCGCTTGCAGAGATAAGGCTCAATCGGGTAACAATACATGCTAATCCACTTGCTGGTTAG 783 0.4087 MSIFRKTKLLVGDLVALATTFLPADSFTLPSHDQLTASTLNSWASCYVQDAELGSSSDQNEMKIPSEFSLSGNTAHDSGRGGAAILNREAFAFNIQRYTLDLILPTNILGDIKCEIFCDEVPKSSENFLALCASGYYDGTVFHRNIKGFMIQGGDPTGTGKGGTSIWGKKFNDEIRESLKHNARGILAMANSGPNTNGSQFFITYAKQPHLNGLYTVFGKVIHGFEVLDLMEKTQTGAGDRPLAEIRLNRVTIHANPLAG 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2633 260 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 106 252 IPR002130 GO:0000413|GO:0003755
Ssu4g2633 260 Gene3D - 89 260 IPR029000 -
Ssu4g2633 260 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 116 131 IPR002130 GO:0000413|GO:0003755
Ssu4g2633 260 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 185 200 IPR002130 GO:0000413|GO:0003755
Ssu4g2633 260 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 142 154 IPR002130 GO:0000413|GO:0003755
Ssu4g2633 260 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 213 228 IPR002130 GO:0000413|GO:0003755
Ssu4g2633 260 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 200 212 IPR002130 GO:0000413|GO:0003755
Ssu4g2633 260 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 137 154 IPR020892 GO:0003755|GO:0006457
Ssu4g2633 260 CDD Cyclophilin_PPIL3_like 104 253 - -
Ssu4g2633 260 SUPERFAMILY Cyclophilin-like 93 256 IPR029000 -
Ssu4g2633 260 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 99 253 IPR002130 GO:0000413|GO:0003755
Ssu4g2633 260 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-LIKE 3 109 259 - -
Ssu4g2633 260 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED 109 259 IPR044666 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2633 Ssu-Chr4 66945591 66956739 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g2633 110 257 U-box Gene Family AT5G67530 54.054 1.18e-53 181
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2633 K12734 - gmx:100306466 311.227