Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2628 ATGGCAGGTTCGAGATTCTGTCCCTGTCCGGTTCATTCCTTGCCGCCGCCAGCCCCGCTGGCGGCGTCAGGACTGGCCATATACCTGGCCGGCGGACAGGGACAAGTGGTAGGTGGAAGTGTGGTGGGACCCCTTGTGGCTTCAGGTCCTGTTGTTATCATGGCTGCTTCATTTGGTAATGCTGCTTATGAGAGACTACCCTTGGAGGAAGAGGAAACTCCGGTGCCAGGTACCGGCACCGGAGGGTTAGGGTCCCCAGGAATCCCAGGGACTCAGCAACAACCGCAATCGCAGCCGCAACAGCCACAACAGCTTGTGGGAGATCCTAATAGTTCTTCTCTTTTCCATGGAGTGCCTCAGAATCTCTCAATTCGTGTCAATTACCAGCTGAGGGTTATTGGGGTGGCACTGCTCGCCCTCCCTTTTAACAAAATGTTTTACTTTCATGGTTTTTTCGGTtatctttgttttcttcttttttaa 483 0.5155 MAGSRFCPCPVHSLPPPAPLAASGLAIYLAGGQGQVVGGSVVGPLVASGPVVIMAASFGNAAYERLPLEEEETPVPGTGTGGLGSPGIPGTQQQPQSQPQQPQQLVGDPNSSSLFHGVPQNLSIRVNYQLRVIGVALLALPFNKMFYFHGFFGYLCFLLF 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2628 160 SUPERFAMILY AF0104/ALDC/Ptd012-like 23 75 - -
Ssu4g2628 160 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 14 126 IPR014476 GO:0003680
Ssu4g2628 160 MobiDBLite consensus disorder prediction 85 110 - -
Ssu4g2628 160 MobiDBLite consensus disorder prediction 67 110 - -
Ssu4g2628 160 Pfam Plants and Prokaryotes Conserved (PCC) domain 24 59 IPR005175 -
Ssu4g2628 160 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 18 14 126 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2628 Ssu-Chr4 66843091 66843573 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g2628 23 63 AT-hook Motif Nuclear Localized (AHL) Family AT3G60870 82.927 3.19e-16 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2628 - - gmx:100816243 107.071