Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2625 ATGAGTATAAACTCTAGTTGTAGTATAAGTGGTGGAAGTGGTAGTGGTGGAAACAATagcggtggtggtagtggcggcGGCGGCGGTAGCCCTTGTGGCGCGTGCAAGTTTTTGAGGAGAAAGTGCGCGCCCGGTTGCATCTTTGCTCCATACTTTGATTCGGAGCAAGGTGCCTCGCACTTTGCGGCGGTGCACAAGGTTTTTGGTGCTAGTAACGTTTCCAAGTTACTCCTTAACATTCCGGTGCATAAGAGGCTTGATGCGGTGGTCACAATTTGTTATGAAGCCCAGGCACGGCTTAGAGACCCCGTGTATGGTTGTGTTGCTCATATCTTCGCACTTCAGCAACAgGTGGTGAGTTTACAAGCAGAACTCTCCTACTTACAAGGCCACCTTGCAACACTAGAGTTACCCCAACCACCGCCACCTTCTTCTCCACAAGCAACCATGTCCATGGTACCTCCAGTGATCTCAATAGCTGACCTCCCATCAACAGCCTCTCCCTCAACCATGCCAGCCACGTATGACCTCTCTTCACTTTTTGATCCCATGGCCCAGACTCCTTCATGGGCCGTGCAACAAAGGCCCATAGACTCACGTCAATATATGGGTAGTAGTGGCACATCAACCACTAGTGCTAGTGGTGGTGATCTTCAAGCATTGGCTCGTGAGCTTTTGCATAGACATGGATCTGACCCAGTTGCATGCTCTAATCCTTCCTCATCTCACTCGCTTTCCAAATGA 744 0.4825 MSINSSCSISGGSGSGGNNSGGGSGGGGGSPCGACKFLRRKCAPGCIFAPYFDSEQGASHFAAVHKVFGASNVSKLLLNIPVHKRLDAVVTICYEAQARLRDPVYGCVAHIFALQQQVVSLQAELSYLQGHLATLELPQPPPPSSPQATMSMVPPVISIADLPSTASPSTMPATYDLSSLFDPMAQTPSWAVQQRPIDSRQYMGSSGTSTTSASGGDLQALARELLHRHGSDPVACSNPSSSHSLSK 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2625 247 PANTHER LOB DOMAIN-CONTAINING PROTEIN 18 7 231 - -
Ssu4g2625 247 PANTHER LOB DOMAIN CONTAINING PROTEIN 7 231 - -
Ssu4g2625 247 MobiDBLite consensus disorder prediction 1 23 - -
Ssu4g2625 247 ProSiteProfiles LOB domain profile. 30 132 IPR004883 -
Ssu4g2625 247 Pfam Lateral organ boundaries (LOB) domain 31 129 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2625 Ssu-Chr4 66754576 66758392 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g2625 34 247 AS2 family AT2G45420 63.111 6.53e-86 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Ssu4g2625 LOB 2.2e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2625 K21994 - gmx:100779541 348.977
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g0883 3 21240213 21244275 Ssu4g2625 4 66754576 66758392 PCT