Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2624 aTGGACTGTGGGGGTAAGATTGGTGGAACTGAAAGAGGTGGGCCTTGTGGTGCCTGCAAGTTCCTGAGGAGAAAGTGTGTGAAGGGTTGCATATTTGCACCATACTTTGACTCGGACCAAGGAACGGCTCATTTTGCTGCGGTGCACAAGGTGTTTGGTGCTAGCAATGCCTCTAAGCTACTCATGCGCATACCAGCACACAAGCGTCTTGATGCTGTTGTTACTCTTTGCTATGAGGCTTTGGCTAGGGCTAGAGACCCAGTTTATGGTTGTGTTGGTCACCTCTTTGCTCTTCAACAACAGGTCATGAACTTGCAGGCTGAGTTAACCTATGTCCAGGCCCGTCTTGCCACAATGCAGCGCCTGCCAATGCCAGTGGCTTCTCTTCCACAACCTCATAGCTCTTCACCAACTCTTCATTCCTCAGATCATTTGGCATCAAATGCTGACTTACAAGGTGCCTGTATGCACTTTGATCCTCTTCAGATGCATTCAACATCGTTAGAACTAAGCAACGTTTTCAATCCATCAGATCAACAACTCGAGGATAGGGAACTCCAAGCTTTGGCCAGAGACTTTGTGACCAAATACTTGCCCGGAGTAAGATTCCAGCAATCTAACTCTCCCTGA 630 0.481 MDCGGKIGGTERGGPCGACKFLRRKCVKGCIFAPYFDSDQGTAHFAAVHKVFGASNASKLLMRIPAHKRLDAVVTLCYEALARARDPVYGCVGHLFALQQQVMNLQAELTYVQARLATMQRLPMPVASLPQPHSSSPTLHSSDHLASNADLQGACMHFDPLQMHSTSLELSNVFNPSDQQLEDRELQALARDFVTKYLPGVRFQQSNSP 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2624 209 ProSiteProfiles LOB domain profile. 14 116 IPR004883 -
Ssu4g2624 209 Pfam Lateral organ boundaries (LOB) domain 15 113 IPR004883 -
Ssu4g2624 209 PANTHER LOB DOMAIN-CONTAINING PROTEIN 19 10 199 - -
Ssu4g2624 209 PANTHER LOB DOMAIN CONTAINING PROTEIN 10 199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2624 Ssu-Chr4 66710269 66715019 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g2624 13 207 AS2 family AT4G00210 56.667 1.31e-73 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Ssu4g2624 LOB 2.4e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2624 - - gmx:100791377 374.015