Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2621 ATGGAAGCCAGAGAAGGTATTAGTTCTGGGGTTACAGTGATAGGGGCAGAAGCTCCATCAGCTTATCATGTGGCGCCGAGGAGCGAAGCTCCGAACCAGGTTCATGTCCCTGATgggggaggtggtggtggtgctgcAGCTGTCGGTGTTTCACCTGTGAGTGTGGGGTTGGATGGAACAGCAGTTAAGAAGAAACGGGGTAGACCGAGGAAATACGGGCATGATGGGTCTGTCACTATGGCATTGTCACCAATGCCAATCTCGTCTTCTGCTCCGCCTTCTAATGACTTTTCGTCCGGGAAGCGGGGGAAAATGCGGGGGATGGAATATAAGCAGTCGAAAAAAGTTGGTTTGGATTATCTAGGTGACTTGAATGCTTGCTCTGATGGTACAAATTTTATGCCGCATATCATCACTGTCAATGCTGGCGAGGACATTACGATGAAGGTGATATCCTTTTCTCAACAAGGGCCACGAGCTATATGTATCTTATCTGCTAATGGTGTAATTTCAAATGTTACACTTCGTCAGCCTGATTCTTCTGGGGGCACTTTAACTTATGAGGGCCGTTTTGAGATACTTTCCTTGTCTGGATCATTCATGCCTACTGACAACCAAGGAACAAGAAGCAGGTCTGGTGGAATGTCTGTCTCGTTGGCTAGCCCTGATGGCCGTGTTGTAGGTGGTGGAGTAGCTGGTCTTCTTGTAGCTGCCAGTCCTGTGCAGGTGGTGGTGGGAAGCTTTTTACCAAGCAGCCAGCAAGAACAGAAACTAAAGAAGCCCAAATCTACTGATTATGCACCAGCCACTGTTACTCCAGCCATTGCAGTGTCTTCTGCACCACCACCTCCAACCAATGCTGAAAGAGAGGATGTGAATGTGATGGGTGGAGCACATGTACTGCAAAATTCTGGAACCCTTAACTCAAACCTCCCTCCTCCTAATGCCTTTAGAAGAGACAACTGGGTGAACATGCACTCTATGCCAGACTCAAGAAAGCCAGCTACTGATATTAACATATCTTTGCCTGATAGTTAA 1038 0.4634 MEAREGISSGVTVIGAEAPSAYHVAPRSEAPNQVHVPDGGGGGGAAAVGVSPVSVGLDGTAVKKKRGRPRKYGHDGSVTMALSPMPISSSAPPSNDFSSGKRGKMRGMEYKQSKKVGLDYLGDLNACSDGTNFMPHIITVNAGEDITMKVISFSQQGPRAICILSANGVISNVTLRQPDSSGGTLTYEGRFEILSLSGSFMPTDNQGTRSRSGGMSVSLASPDGRVVGGGVAGLLVAASPVQVVVGSFLPSSQQEQKLKKPKSTDYAPATVTPAIAVSSAPPPPTNAEREDVNVMGGAHVLQNSGTLNSNLPPPNAFRRDNWVNMHSMPDSRKPATDINISLPDS 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2621 345 MobiDBLite consensus disorder prediction 83 103 - -
Ssu4g2621 345 SUPERFAMILY AF0104/ALDC/Ptd012-like 133 253 - -
Ssu4g2621 345 MobiDBLite consensus disorder prediction 83 97 - -
Ssu4g2621 345 Pfam Plants and Prokaryotes Conserved (PCC) domain 135 248 IPR005175 -
Ssu4g2621 345 PANTHER AT HOOK MOTIF DNA-BINDING FAMILY PROTEIN 1 344 - -
Ssu4g2621 345 ProSiteProfiles PPC domain profile profile. 130 272 IPR005175 -
Ssu4g2621 345 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 1 344 IPR039605 GO:0003680
Ssu4g2621 345 CDD DUF296 135 225 IPR005175 -
Ssu4g2621 345 Gene3D - 135 266 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2621 Ssu-Chr4 66648352 66658218 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g2621 10 280 AT-hook Motif Nuclear Localized (AHL) Family AT4G12080 57.860 5.17e-98 292
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2621 - - gmx:100793726 596.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g0886 3 21316825 21320702 Ssu4g2621 4 66648352 66658218 PCT