Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2606 ATGGAAGATTCTGATCAACCTGCCAAATCTGCTGAAAACCAGCAAACTGAACAAGATAATGAGGAGGACTCAAACAAAGAAACTTCTCTGTTGCATATTCAGAAGAAGACCTTAAAGCCTGACAATAAGTTGTACTTTTCTACTGGCTCTTCAAAAAGCTCTGCATCTGCTGAACCAAGTGAAGAATCTGGAAAACCAGTCTTTCAGTTCGAGTCTTCAAAAGAGATTCAAGTTCAACATGATAACAAAGCAACAGCAACTCTAGAGACAGAGACTGATTTTTCAAAAGATGCTCGTGCCATCCGTGAAAGAGCTCTTAGGCAAGCAGCAGAGAGTCTGAAAGGGAAAAGCGCAAGCTCTGAgggtgaaaaattatataagggAATTAACAATTACAAAGACTACAAGGCTGGCTTTCGTAGGGAGCAAACAATTGCTAGTGAAAAAGCTGGTGGGGCACATGGTCCTCTTAGGGCTTCAGCTCATATAAGAGTTTCAGCAAGGTTTGATTATCAGCCTGATATATGTAAGGATTACAAGGAAACTGGTTACTGTGGATATGGTGATTCATGTAAGTTTATGCACGATCGAGGGGATTACAAGTCCGGGTGGCAGGTGGAGAAGGAATGGGAAGAAGCTGAGAAAGCAAGGAAGATGAGATTGGCTGCAGGTGAGGATGCGGATGAGGAAGAGGGTGCTAATTTAactgatgaagatgatgatgattcGTTACCGTTTGCATGTTTCATTTGTAGAAACCCTTTTGTGGATCCTGTTGTAACCAAATGCAAGCACTACTTCTGCGAGCATTGTGCATTGAAGCATCATGCAAAGAATAAGAAATGTTTTGTCTGCAACCAGCCAACGCTTGGCATTTTTAATGTTGCTCATGAGATACGCAGGAAGATGGCTGAGGATAAATAA 924 0.4015 MEDSDQPAKSAENQQTEQDNEEDSNKETSLLHIQKKTLKPDNKLYFSTGSSKSSASAEPSEESGKPVFQFESSKEIQVQHDNKATATLETETDFSKDARAIRERALRQAAESLKGKSASSEGEKLYKGINNYKDYKAGFRREQTIASEKAGGAHGPLRASAHIRVSARFDYQPDICKDYKETGYCGYGDSCKFMHDRGDYKSGWQVEKEWEEAEKARKMRLAAGEDADEEEGANLTDEDDDDSLPFACFICRNPFVDPVVTKCKHYFCEHCALKHHAKNKKCFVCNQPTLGIFNVAHEIRRKMAEDK 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2606 307 SMART c3hfinal6 170 197 IPR000571 GO:0046872
Ssu4g2606 307 SMART ring_2 248 285 IPR001841 -
Ssu4g2606 307 Pfam Zinc finger, C3HC4 type (RING finger) 247 289 - -
Ssu4g2606 307 PANTHER ZINC FINGER PROTEIN 183 12 306 IPR039971 -
Ssu4g2606 307 SUPERFAMILY CCCH zinc finger 169 201 IPR036855 GO:0046872
Ssu4g2606 307 ProSiteProfiles Zinc finger RING-type profile. 248 286 IPR001841 -
Ssu4g2606 307 MobiDBLite consensus disorder prediction 41 85 - -
Ssu4g2606 307 MobiDBLite consensus disorder prediction 15 39 - -
Ssu4g2606 307 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 246 305 IPR013083 -
Ssu4g2606 307 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 1-LIKE 12 306 - -
Ssu4g2606 307 ProSitePatterns Zinc finger RING-type signature. 263 272 IPR017907 -
Ssu4g2606 307 ProSiteProfiles Zinc finger C3H1-type profile. 170 198 IPR000571 GO:0046872
Ssu4g2606 307 MobiDBLite consensus disorder prediction 1 91 - -
Ssu4g2606 307 SUPERFAMILY RING/U-box 247 290 - -
Ssu4g2606 307 Gene3D - 168 202 - -
Ssu4g2606 307 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 171 196 IPR000571 GO:0046872
Ssu4g2606 307 CDD RING-HC_RNF113A_B 246 286 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2606 Ssu-Chr4 66170538 66172008 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g2606 6 307 C2H2 Transcription Factor Family AT1G01350 68.197 1.14e-150 424
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Ssu4g2606 zf-C3HC4_3 8e-09 CL0229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2606 K13127 - gmx:100787434 555.444