Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2597 ATGGGGCGTATGCACAGTCGCGGtaagGGTATCTCCAGTTCGGCTCTTCCCTATAAGAGGACACCACCTAGCTGGCTCAAGATCTCTTCTCAGGATGTGGAGGAGAACATCTGCAAGTTTGCCAAGAAAGGTCTCACTCCATCTCAAATCGGTGTTATTCTTCGTGACTCTCACGGAATTGCTCAGGTGAAGAGTGTTACCGGAAGCAAGATTCTCCGTATATTGAAGGCCCATGggCTTGCTCCTGAAATTCCTGAAGATTTGTATCACCTAATCAAGAAGGCTGTCTCAATTAGGAAGCACTTGGAGAGGAACAGGAAGGACAAGGATTCTAAATTCAGGTTAATTTTGGTTGAGAGTAGGATTCACCGCCTTGCCCGTTACTATAAGAAGACAAAGAAACTTCCACCTGTGTGGAAATAtggtggtgacgacaacaatgatggtggtggtggtggtaatgctAGCGGTGACAGGGTGTCGATGGTGACGATTGTGGCGGTGCTGATGATGACAATTGTGGCCGTGCCGACGGCAGCTGTTGTGGCGATACTAGTGGGGTGGTGGTGGaagatggtgatgaagcttgtgtgTGGTGGTGGAGGTAATGCTGGTGGTCATGGTAGTGGCGGCAGcggtaatggtggtggcagtgccggtggtcgtggtggtgatggtagtagtagtggtagtggtgacagtAGCTGCGACAGCAGTAATGGTGGcggtagtagtggtggtgacaatggcggtggttgtggtggtggtggtactGGCGAGaaagactattgtcaaatatag 801 0.3708 MGRMHSRGKGISSSALPYKRTPPSWLKISSQDVEENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYGGDDNNDGGGGGNASGDRVSMVTIVAVLMMTIVAVPTAAVVAILVGWWWKMVMKLVCGGGGNAGGHGSGGSGNGGGSAGGRGGDGSSSGSGDSSCDSSNGGGSSGGDNGGGCGGGGTGEKDYCQI 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2597 266 Gene3D - 83 146 - -
Ssu4g2597 266 Hamap 30S ribosomal protein S15 [rpsO]. 3 149 IPR023029 -
Ssu4g2597 266 ProSitePatterns Ribosomal protein S15 signature. 98 128 IPR000589 GO:0003735|GO:0005840|GO:0006412
Ssu4g2597 266 SMART Ribosomal_S15_2 70 149 IPR000589 GO:0003735|GO:0005840|GO:0006412
Ssu4g2597 266 Gene3D - 35 82 - -
Ssu4g2597 266 MobiDBLite consensus disorder prediction 224 246 - -
Ssu4g2597 266 SMART Ribosomal_S13_N_2 1 60 IPR012606 GO:0003735|GO:0005840|GO:0006412
Ssu4g2597 266 Pfam Ribosomal protein S15 74 134 IPR000589 GO:0003735|GO:0005840|GO:0006412
Ssu4g2597 266 MobiDBLite consensus disorder prediction 208 266 - -
Ssu4g2597 266 PANTHER RIBOSOMAL PROTEIN S15P/S13E 1 142 IPR023029 -
Ssu4g2597 266 SUPERFAMILY S15/NS1 RNA-binding domain 66 142 IPR009068 -
Ssu4g2597 266 CDD Ribosomal_S15p_S13e 70 141 IPR000589 GO:0003735|GO:0005840|GO:0006412
Ssu4g2597 266 PANTHER 40S RIBOSOMAL PROTEIN S13 1 142 - -
Ssu4g2597 266 Pfam Ribosomal S13/S15 N-terminal domain 1 60 IPR012606 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2597 Ssu-Chr4 66012236 66016505 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g2597 1 141 Cytoplasmic Ribosomal Protein Gene Family AT4G00100 93.617 3.13e-96 277
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2597 K02953 - egr:104442247 283.493