Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2568 ATGGCACAACTCAACCTCACGTTGCTAGTCATtttcctctctctcctcttttcaATTCTTGCCACCCTAGTCGAGCCATCATCATTGGCAAGGCATGACAATTCCCAAGCAATGACCTACATAGAGTCCTCTTGCAATGGCACCCTCTATCCAAATCTTTGCATCCGTTGCTTGGCCCGATATGCCAAATCCACCATAAATGGCCCACAACACTTGGCCCAATATACCTTGTCGATGAGCCTCTCTAGAGCACTTCACACAAGAGGGTACCTTTTGAAAGTGGCCAAAGAACTTAAGGGCGTCAAGAACAACAAAAGGGAGTACCTAATCGTGCAAGATTGTGTGGACCAAATCACAGATAGTGTGGACCAACTTAGCCAAGCCATCAAAGAACTTCGAAGCTTGAACCAAGGTGGGTCCACCATCAATGATAACATGTTGTGGCACATTAGCAATGTTGAGACATGGGTGAGCACTGCCTTAACAGATGCTAGTAGTTGTGTGTACTCATTTCCTGGGCATAGGATGAGTAAGAAAGTAGCTGCTATTAAGGTTGAGGCCATGAATGTGGCAGAAGTTACTAGTAATGCACTTGCCTTGTTTCTTAGATATGCATCTAGGTACCAGCAAGCAGCAATTATAACCACCAAGAAGCCCTAG 660 0.4394 MAQLNLTLLVIFLSLLFSILATLVEPSSLARHDNSQAMTYIESSCNGTLYPNLCIRCLARYAKSTINGPQHLAQYTLSMSLSRALHTRGYLLKVAKELKGVKNNKREYLIVQDCVDQITDSVDQLSQAIKELRSLNQGGSTINDNMLWHISNVETWVSTALTDASSCVYSFPGHRMSKKVAAIKVEAMNVAEVTSNALALFLRYASRYQQAAIITTKKP 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2568 219 Gene3D Invertase/pectin methylesterase inhibitor family protein 36 203 IPR035513 -
Ssu4g2568 219 SMART PMEI_2 36 200 IPR006501 GO:0004857
Ssu4g2568 219 PANTHER PECTINESTERASE INHIBITOR-LIKE 2 208 - -
Ssu4g2568 219 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 40 201 IPR035513 -
Ssu4g2568 219 CDD PMEI-like_3 43 206 - -
Ssu4g2568 219 Pfam Plant invertase/pectin methylesterase inhibitor 40 200 IPR006501 GO:0004857
Ssu4g2568 219 PANTHER BNAANNG18590D PROTEIN 2 208 - -
Ssu4g2568 219 Coils Coil 115 135 - -
Ssu4g2568 219 TIGRFAM PME_inhib: pectinesterase inhibitor domain 12 201 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2568 Ssu-Chr4 65235975 65236634 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g2568 41 216 Carbohydrate Esterase AT3G14310 24.309 4.24e-11 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2568 - - gmx:100791798 349.747