Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2566 ATGGCCCTCtatgccaccaccaccaccttgcTCCTCCACCTTGCAAtggccaccaccaccaccctttGCCTCCAAGAAATGGAGGTGCTCCAAATGGCCCAAACACATGTTTCTCAAGCCAAGAATTGGGTTGACAACTCTTTGAGACTGCATGGCTTGGGAAGCCTTAGCCTTTCTGATCAAACAAGTACTATAGCTCTTAGAGATTGTGCCAAGCTCTATGAGGAGAGTGAGTCTCGGCTCTCCCACATGATGTCTCAAGAGAGTAGTTACACCAAAGAAGATGCACTTACATGGGTAAGTGCTGTGATGACAAATCATAGGACCTGTTTGGATGGATTGCAAGAAAAAGGGTATGCTGAAGCTCAGGTTTTGGATAGAAACACGACCATGTCGCTTAAGCAAGCCCTTGTTTTGTGTTCAGAGAATAAAGGCAGGGCTGGCAAAGGACCACCTGAGAGAACAATACCCAAAACAGATGCTGGTAATCTAGAATCATGGAGTCCAGCAACCTACAAGGCAGACTTCACAGTGGCACAGGATGGTTCAGGGACCCACAGAACAATCCAAGCAGCAGTAAATGCACTTGCTGCAATGGGGCACAACCGTCCTGCAAGAGCAGTCATACATGTAAAAGCAGGGGTCTATAATGAGAAGGTGGAAATTGGACAGAAACTGCAGAATGTGATGTTTGTTGGAGATGGCATAGACAAAACTGTTATCACTGGCAACAGATATTTTGCTCAACTTTCTTCCACTCTAAGAACAGCCACATTTGGTAAGACTATGAATAATTTGtctaaagtaacaaaataa 816 0.4179 MALYATTTTLLLHLAMATTTTLCLQEMEVLQMAQTHVSQAKNWVDNSLRLHGLGSLSLSDQTSTIALRDCAKLYEESESRLSHMMSQESSYTKEDALTWVSAVMTNHRTCLDGLQEKGYAEAQVLDRNTTMSLKQALVLCSENKGRAGKGPPERTIPKTDAGNLESWSPATYKADFTVAQDGSGTHRTIQAAVNALAAMGHNRPARAVIHVKAGVYNEKVEIGQKLQNVMFVGDGIDKTVITGNRYFAQLSSTLRTATFGKTMNNLSKVTK 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2566 271 Pfam Plant invertase/pectin methylesterase inhibitor 30 123 IPR006501 GO:0004857
Ssu4g2566 271 PANTHER PECTINESTERASE 7 262 - -
Ssu4g2566 271 Pfam Pectinesterase 175 262 IPR000070 GO:0030599|GO:0042545
Ssu4g2566 271 Gene3D - 169 268 IPR012334 -
Ssu4g2566 271 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 36-RELATED 7 262 - -
Ssu4g2566 271 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 29 131 IPR035513 -
Ssu4g2566 271 MobiDBLite consensus disorder prediction 144 164 - -
Ssu4g2566 271 CDD PMEI-like_4 27 124 - -
Ssu4g2566 271 TIGRFAM PME_inhib: pectinesterase inhibitor domain 31 131 IPR006501 GO:0004857
Ssu4g2566 271 SMART PMEI_2 7 139 IPR006501 GO:0004857
Ssu4g2566 271 Gene3D Invertase/pectin methylesterase inhibitor family protein 18 142 IPR035513 -
Ssu4g2566 271 SUPERFAMILY Pectin lyase-like 170 265 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2566 Ssu-Chr4 65168151 65170293 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g2566 9 260 Carbohydrate Esterase AT3G60730 38.194 6.56e-60 196
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2566 K01051 - gmx:100792852 374.785