Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2560 ATGCAATTCAAGCTCGGCAAGCGCGTGATCCGGGTAACTAAATGGATCTTCCGTCGAGTCAGGACCAGACCTGAGTGCCGTCGTCTCGGTTCTTCCCCTTCAAGGAGCCCCATGACGAAACTTCTCCTCATGTGGGGGCAGAAGTTGAAGAGAGGAGCGAGGTCTTTATGCACGAGAAGCGGGTCGAGTTATGTTCCCGTCGGGTCGGATCTGGTTTGCGATAAGGTTTCGGCGGTGCCGAAGGGGCACTTGGCGGTGTACGTAGGGGAGGAAGACAGCGAGTTTCATCGGGTTCTGGTGCCGGTGATTTACTTCAACCACCCTTTGTTCAGCGAGTTGCTGAGGGAAGCGGAGAAGGAGTTCGGGTTCGAGCACCCGGGTGGGATCATGATTCCGTGTCGGCTCACTGATTTTGAACGGGTCAAGACCCGGATTGCGTCCGGGTCGGGTTTGCGAGGCAGGACCCGAGATTGGCGTCGCGGCTACATTGTTGATGGTTGA 501 0.5669 MQFKLGKRVIRVTKWIFRRVRTRPECRRLGSSPSRSPMTKLLLMWGQKLKRGARSLCTRSGSSYVPVGSDLVCDKVSAVPKGHLAVYVGEEDSEFHRVLVPVIYFNHPLFSELLREAEKEFGFEHPGGIMIPCRLTDFERVKTRIASGSGLRGRTRDWRRGYIVDG 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2560 166 Pfam Auxin responsive protein 65 142 IPR003676 GO:0009733
Ssu4g2560 166 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 3 160 IPR003676 GO:0009733
Ssu4g2560 166 PANTHER SMALL AUXIN-UP RNA-RELATED 3 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2560 Ssu-Chr4 64992855 64993355 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g2560 76 141 Calmodulin-binding Proteins AT4G31320 48.485 1.34e-14 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2560 K14488 - gmx:100808164 238.424