Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2558 ATGTCCGCCTCATCCACTTCCTTTTCACCGGACCAACACCTCTCTCCCTCCGACCAGCTCTGCTATGTCCATTGCAACTTCTGTGACACTGTCCTCGCGGTGAGTGTCCCTTGCACCAGTTTGTTTAAGACTGTCACAGTGAGATGTGGTCATTGCACCAACCTTCTCTCAGTCAACATGCGTGGACTGCTTCTTCCTGCTACTAATCAGCTTCACCTTGGCCACACCTTCTTCACTCCTCAAAATCTtctgGAGGAGATTCGAAATGCACCTTCAACAAACATGATGAATCAACTACCGAACCCTAATGATTTGGTCATGAGCACCATGCGAGGAGGGCCTGAAGAAACCCCTAAGCCTCCATCAGCTAATAGACCTCCAGAGAAGAGACAGAGAGTTCCATCTGCTTACAACCGCTTCATCAAggATGAGATCCAACGTATCAAAGCTGGGAATCCTGATATAAGCCACAGAGAGGCCTTTAGTGCAGCTGCAAAGAATTGGGCCCATTTTCCACACATTCATTTCGGACTTATGCCTGATCATCAACCCGTGAAGAAAGCTAATGTTCGTCAGGAATCAGAGGACGTGCTTATGAAAGACGGGTTTTTCGCACCGGCTAATGTAGGCGTCTCTCCCTACTAG 645 0.4791 MSASSTSFSPDQHLSPSDQLCYVHCNFCDTVLAVSVPCTSLFKTVTVRCGHCTNLLSVNMRGLLLPATNQLHLGHTFFTPQNLLEEIRNAPSTNMMNQLPNPNDLVMSTMRGGPEETPKPPSANRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGLMPDHQPVKKANVRQESEDVLMKDGFFAPANVGVSPY 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2558 214 Gene3D High mobility group box domain 115 177 IPR036910 -
Ssu4g2558 214 Pfam YABBY protein 16 178 IPR006780 GO:0007275
Ssu4g2558 214 PANTHER PROTEIN YABBY 6-RELATED 1 212 IPR006780 GO:0007275
Ssu4g2558 214 SUPERFAMILY HMG-box 119 172 IPR036910 -
Ssu4g2558 214 MobiDBLite consensus disorder prediction 107 133 - -
Ssu4g2558 214 PANTHER PROTEIN YABBY 4 1 212 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2558 Ssu-Chr4 64925000 64927467 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g2558 27 212 C2C2-YABBY Transcription Factor Family AT4G00180 62.679 7.96e-70 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Ssu4g2558 YABBY 8.9e-74 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2558 K25796 - gmx:100781267 434.491