Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2552 ATGGGCAATTCGCACAATAATCATAACAACTTAATCATTCACATTCAGCTCCATGTCGCGCTTAGCACAAGAAGGGCCATGCTTAGCGCTATAAACCCTGGTATGTCTATGGCAATTGCCTCATTGGATTTTATTCTTCCTAATCTTCTTAATTCGTTTGATTGGGAATTGCCAGCAGGAATGAGAAAAGAAGACAATGATACTGAAATGTTGCCAGGACTTGCTCAGCACAAGAAGAATCCTCTCTATGTTTTGGTCAAGTTTCAGCGTGACACTTGTAGGGCCAGAATGGTGTCACCAATTCTAATCCTATGCCTTACTCTTCTTatgcttttgttatttttcttccaaTACCGCAGAAACTTCAAAAACCCAGCCCTTCCACCAGGTCCTAGAGGCCTTCCCATAATAGGGAATCTTCATCAGCTAAATAATTCTGTTCTTTATCTTCAACTATGGCAACTCTCAAAGAAATACGGGCCTTTATTTTCCCTTCAATTAGGTTTAAGGCTAGCCATCGTTGTTTCCTCCCCTAAACTGGCCAAAGAGGCTATGAAAGATAATGACCATGAGTTTAGTGGACGACCGAAATTACTTGGCCAGCAGAAATTGTCCTACAATGGGTTAGAGATGATATTTTCCCCATATAGTGACTTTTggagagaaattagaaaaatttgtgTTGTCCATGTCCTTAGCTCCAGACGTGTCTCAAGATTTTCCTCAATAAGACAGTTTGAGGTCAagcaaatgataaaaaaaatatctaggCACGCCGCGTCTTCAAAGGTTACAAATTTGAATGAAGTGCTAATGTCTCTTACTAGCACTATTATATGTAGAATTGCCTTCGGGAGAAGGTATGAAGATGAAGGAACCGAAAGGAGTCGATTCCATGGGCTGCTCAATGAGTGTCAGGCCATGATGGGCACTTTCTTTTTCTCAGATTATATTCCTTTCTTAGGTTGGATTGATAAACTCACGGGACTGCATGTTCATCTTGAAAGTACTTTCAAGGAATTGGATAAGTTCTACCAACAAGTCATTGACGAACACATGGATCCCAATAGAAAGACTCCAGAGAACGAGGATATAATAGATGTGTTACTTCAACTGAAGAAGCAACGTTCGTTTTCCGTAGAGCTCACAAATGATCACATCAAAGCGGTGCTCATGGACATGCTTGTAGCAGCAACGGATACAACTGCAGCCACAACAGTCTGGGCTATCACTGCACTACTAAAAAATCCAAGAGTAATGAAGAAAGCTCAAGAAGAAATTAGGAGTTTGGGAGGTAAAACGGATTTTCTAAGTGAAGATGAAATTCAAAAGTTTCCCTATTTCAAGGCTGTGATAAAAGAGACACTGAGACTGCATCTACCAGCACCGCTACTTGTGCAAAGAGAAACAAATGAACGATGTATTATAGATGACTATGAAATTCCAGCCAAGACAATAGTGTATGTGAATGCTTGGGCTATCCATAGAGACCCTAAGGCTTGGAAAGACCCAGATGAGTTTTTACCCGAGAGGTTCTTAGATAGTACTATAGATTTTCGAGGGCAAGATTTTGAGTTAATTCCATTTGGTGCTGGTCGTCGAATATGCCCTGGTATGCCTATGGCAATTGCCTCATTGGATCTTATTCTTGCTAATCTTCTTCATTCGTTTGATTGGGAATTGCCAGCAGGAATGAGAAAAGAAGACATTGATACTGAAATGTTGCCAGGACTTGCTCAACACAAGAAGAATCCTCTCTATGTTTTGGCCAAGTGTCGAATCTAA 1785 0.3938 MGNSHNNHNNLIIHIQLHVALSTRRAMLSAINPGMSMAIASLDFILPNLLNSFDWELPAGMRKEDNDTEMLPGLAQHKKNPLYVLVKFQRDTCRARMVSPILILCLTLLMLLLFFFQYRRNFKNPALPPGPRGLPIIGNLHQLNNSVLYLQLWQLSKKYGPLFSLQLGLRLAIVVSSPKLAKEAMKDNDHEFSGRPKLLGQQKLSYNGLEMIFSPYSDFWREIRKICVVHVLSSRRVSRFSSIRQFEVKQMIKKISRHAASSKVTNLNEVLMSLTSTIICRIAFGRRYEDEGTERSRFHGLLNECQAMMGTFFFSDYIPFLGWIDKLTGLHVHLESTFKELDKFYQQVIDEHMDPNRKTPENEDIIDVLLQLKKQRSFSVELTNDHIKAVLMDMLVAATDTTAATTVWAITALLKNPRVMKKAQEEIRSLGGKTDFLSEDEIQKFPYFKAVIKETLRLHLPAPLLVQRETNERCIIDDYEIPAKTIVYVNAWAIHRDPKAWKDPDEFLPERFLDSTIDFRGQDFELIPFGAGRRICPGMPMAIASLDLILANLLHSFDWELPAGMRKEDIDTEMLPGLAQHKKNPLYVLAKCRI 594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2552 594 Pfam Cytochrome P450 128 585 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu4g2552 594 PRINTS P450 superfamily signature 397 414 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu4g2552 594 PRINTS P450 superfamily signature 536 547 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu4g2552 594 PRINTS P450 superfamily signature 527 536 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu4g2552 594 PRINTS P450 superfamily signature 450 461 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu4g2552 594 PANTHER CYTOCHROME P450 71B11-RELATED 31 88 - -
Ssu4g2552 594 SUPERFAMILY Cytochrome P450 128 593 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu4g2552 594 PANTHER CYTOCHROME P450 71B11-RELATED 101 593 - -
Ssu4g2552 594 Gene3D Cytochrome P450 121 594 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu4g2552 594 PANTHER CYTOCHROME P450 FAMILY 71 PROTEIN 31 88 - -
Ssu4g2552 594 PANTHER CYTOCHROME P450 FAMILY 71 PROTEIN 101 593 - -
Ssu4g2552 594 PRINTS E-class P450 group I signature 180 201 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu4g2552 594 PRINTS E-class P450 group I signature 274 292 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu4g2552 594 PRINTS E-class P450 group I signature 386 403 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu4g2552 594 PRINTS E-class P450 group I signature 449 467 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu4g2552 594 PRINTS E-class P450 group I signature 526 536 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu4g2552 594 PRINTS E-class P450 group I signature 156 175 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu4g2552 594 PRINTS E-class P450 group I signature 490 514 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu4g2552 594 PRINTS E-class P450 group I signature 406 432 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu4g2552 594 PRINTS E-class P450 group I signature 536 559 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu4g2552 594 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 529 538 IPR017972 GO:0005506|GO:0016705
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2552 Ssu-Chr4 64663150 64671291 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g2552 33 82 Cytochrome P450 AT4G31500 44.000 1.59e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2552 - - gmx:100801312 840.876