Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2543 ATGAAGGCCATGCCCTTGCCTTTTGAGGAATTTCAAGGGAAGGGAGTGTTGGATTTCTCTTCAGCCTCAGATTCATTTTCAGTGCTTTTGCATCATCCACAACCTAAGTGGACCATAGACAAAGAGGATTATTGCTATGTGGGCAGCACTGAGCCCACCTCAGTTCTTGACTCCAGAAGAAGCCCAAGCCCTCCCACTTCCTCCTCCACAATGTCCTCTTCTCTTGGCAGCAACAGCACCAGCAAGGGTGGCAGTGGTACCTCAGCCAACAACGCCACTGGTGCACCCACAGAGAACCCTCCTCAGGAGTCCTTGGAAACCAGCCCTGAAAAATGTGGCATCAGGATGGAGGACTGGGAGGGTCAAGATCAATCCATTCTGAGACTCATCATGGGAGATGTTGAAGACCCTTCTGCTGGATTGAGCAAGCTCCTGCAAAGCACTGCCTGTGGCTCTCAAAGTGTTGATTTCAATGCAGGTTTTGGTGTTGTGGATCAAGGGTTGAACATGGTGAGTAGTATTGATCCTTCTGGGAATTACCCTGCTGGTTTCCCTTTCATTGCTGAGAATATTGATGGCAACAATGCAAAGGTTGGTTCTGTGTCGGTTTCAGAATCTGTTGTTTTCTCTGCTAACAATCCTCTCATGGTGTCATCATCTCCTGGTGTGTTCACCTCTCAGCAGCAGCAGGAGTTTGGAGTGGTGGATGAGAAGCCTCAGGTTATCAATCCACAGTTTATGTTAAACCAGAACCAAGTTCAGTTCTCAGAGAACCCTTCTTTCTTTGTGCCGTTGATGTACCCCCAAGTGCAAGAGCAGCAGGTTTTCTCTCAGCATCCGGCAAAACGCCCACTTTTTGACCCAATTGGGCACAATTATCAGGCTCCAAGGTTGCCCCTTTTGGATTCAGGGCAAGAGATGTTTGGTAGGAGGCAGCAAACACAGCTTCCATTGTTTCCTCACCATatgcagcaacaacaacaacaacagccaTTGGTTATGCCTTCTGCGAAACAACAGAAGGTGAGTTCCACCGGAGACGATGCAAGCCACCAGCTTCAGCAGGCTATATTTGACCAGTTATACAAAACTGCTGAGCTGATAGAAGCTGGTAATCCGGTTCATGCGCAAGGGATATTGGCGCGGCTCAATCACCAGCTCTCCCCAATTGGTAAGCCTTTCCAGAGGGCTGCTCTCTACATGAAGGAGGCCTTGATGTCACTGCTTCATTCAAATGCTCACAGTTTTTTGGCTTTCTCGCCGATTAGtttcatattcaaaattggAGCATATAAGTCCTTTTCTGAGATATCACCCGTTATCCAGTTTGCCAATTTTACTTGCAACCAAGCCCTCATCGAAGCTGTGGAAAGGTTTGACCGAATTCATGTCATTGATTTTGATATCGGGTTTGGAGTGCAGTGGTCATCTTTTATGCAAGAGCTTGCCTTGAGAAGTAATGGTGCACCTTCGCTCAAAGTCACTGCCGTTGTGTCACCCTCCACTTGTGATGACGTTGAGCTCAATTTCACCCGAGAGAATTTGAATCAATACGCGAAAGACATCAACGTGCCGTTCGAGTTCAATGTTTTGAGCATTGAATCATTGAGCTCTCCTTCCTGTCCACTGCTTGGTCAATTCTTTGATAACGAGGCAATTGCGGTGAACATGCCAGTTTCGAGTTTCACAAACTATCCATCATTGTTTCCTTCGGTTCTTCACTTTGTGAAACAGCTCAGGCCAAAGGTTGTGGTCACTTTGGATAGAAATTGTGATCGAATTGATCTACCGCTTCCCACCAATGTAGTCCATGTTCTCCAATGTTATTCAGCCTTGCTCGAATCACTGGAGGCGGTGAATGTGAATCTTGATGTCCTCCAAAAGATTGAGAGGCATTTCATCCAACCAGCCATCAAGAAAATTATACTTGGCCACCACCATTCTCAAGAAAAATTACCTCCATGGAGGAGCCTCTTTATACAATCTGGATTCTCTCCATTCACGTTTAGCAACTTCACAGAAGCTCAAGCCGAGTGTTTAGTTCAGAGGGCACCTGTAAGGGGATTTCATGTGGAGAGAAAGCCTTCATCTCTTGTTCTATGCTGGCAGAGGAAAGAACTTATCTCAGTTTCTACTTGGAGATGCTGA 2148 0.4567 MKAMPLPFEEFQGKGVLDFSSASDSFSVLLHHPQPKWTIDKEDYCYVGSTEPTSVLDSRRSPSPPTSSSTMSSSLGSNSTSKGGSGTSANNATGAPTENPPQESLETSPEKCGIRMEDWEGQDQSILRLIMGDVEDPSAGLSKLLQSTACGSQSVDFNAGFGVVDQGLNMVSSIDPSGNYPAGFPFIAENIDGNNAKVGSVSVSESVVFSANNPLMVSSSPGVFTSQQQQEFGVVDEKPQVINPQFMLNQNQVQFSENPSFFVPLMYPQVQEQQVFSQHPAKRPLFDPIGHNYQAPRLPLLDSGQEMFGRRQQTQLPLFPHHMQQQQQQQPLVMPSAKQQKVSSTGDDASHQLQQAIFDQLYKTAELIEAGNPVHAQGILARLNHQLSPIGKPFQRAALYMKEALMSLLHSNAHSFLAFSPISFIFKIGAYKSFSEISPVIQFANFTCNQALIEAVERFDRIHVIDFDIGFGVQWSSFMQELALRSNGAPSLKVTAVVSPSTCDDVELNFTRENLNQYAKDINVPFEFNVLSIESLSSPSCPLLGQFFDNEAIAVNMPVSSFTNYPSLFPSVLHFVKQLRPKVVVTLDRNCDRIDLPLPTNVVHVLQCYSALLESLEAVNVNLDVLQKIERHFIQPAIKKIILGHHHSQEKLPPWRSLFIQSGFSPFTFSNFTEAQAECLVQRAPVRGFHVERKPSSLVLCWQRKELISVSTWRC 715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2543 715 MobiDBLite consensus disorder prediction 51 106 - -
Ssu4g2543 715 ProSiteProfiles GRAS family profile. 348 714 IPR005202 -
Ssu4g2543 715 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 7 714 IPR005202 -
Ssu4g2543 715 MobiDBLite consensus disorder prediction 51 110 - -
Ssu4g2543 715 Pfam GRAS domain family 359 714 IPR005202 -
Ssu4g2543 715 PANTHER GRAS FAMILY TRANSCRIPTION REGULATOR 7 714 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2543 Ssu-Chr4 64405212 64407359 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g2543 356 715 GRAS Transcription Factor Family AT4G00150 55.096 4.15e-129 392
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Ssu4g2543 GRAS 2.1e-93 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2543 - - gmx:100801785 1192.56
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g2543 4 64405212 64407359 Ssu4g2543 4 64405212 64407359 ECH
Ssu3g1533 3 40751571 40757187 Ssu4g2543 4 64405212 64407359 PCT