Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2526 ATGCGGTCTCACATGATGAACCTGCCTGTCCCTCCGAAGCCGAGCGAGTTTACACCGGTTCAACTCAGTTTCGAGGCCGAGTCGTCTCCTTCTCAGTCTTCATCTTCCTTCTACGGTCTCAGAGAGAACCCAAAGAGAAGCTTTCGATTCACAGATCCCGAATTTTCTTTCGCAGCCGACACGGGCTCGGTGATCCTCCAAGACAGGGAGAGCGAGACCGAGTCATCGAAGAACCCGACCCGGAGACGATCCAAGAGGGCGTGGCAACTCGGCGAAACGGGGAGGAACATGAAACCGCGCGAAAGCATTAACAGGAACGAATCCGCAAGCTCGGTTTCGGACACGACAACTGAAGAAGACGTCGCATTCTGTCTCATGATGCTGTCTCGCGACAAGTGGAAGGGACATAAACGTGACGATacagaacaacaacaacaacgacgacgacgacgacgaggACCGTATGATGAGGAAGAAGACGacgacgaagaagaagaagaggatggATACGAGTCGGAGGAGCTGAAACCTTCTTCCAAGAAGAGTAGCAAGACGCGAGGCAGGTACAAATGCGAAACGTGTGACAAGGTGTTTCGATCTTACCAGGCGTTGGGTGGACACAGGGCGAGTCACAAGAAGATCAGGTTAGACGAAGCTGAACTCGAAGTGGAGCGCGTTGTCGTGGAGAAGAAAATCCACGAATGCCCGGTTTGTTTTAGGGTCTTCGCCTCGGGGCAGGCTCTGGGTGGACACAAGAGAACGCATGTTATTGGTTCCGCGGCAACTACAACAACCGCGACCGCGACCGCGACCGCAACTGTTTCGGTTAGAACTTCTGCTAGAGTTGGGGACAGTTTGATAGATCTCAATCTCCCTGCTCCGGTGGATGACGATGACGATGTTAGCCAGTTCGATGACTCTGCTGTGTCGGATGCAGAATTTGTTACACTGTGA 954 0.4948 MRSHMMNLPVPPKPSEFTPVQLSFEAESSPSQSSSSFYGLRENPKRSFRFTDPEFSFAADTGSVILQDRESETESSKNPTRRRSKRAWQLGETGRNMKPRESINRNESASSVSDTTTEEDVAFCLMMLSRDKWKGHKRDDTEQQQQRRRRRRGPYDEEEDDDEEEEEDGYESEELKPSSKKSSKTRGRYKCETCDKVFRSYQALGGHRASHKKIRLDEAELEVERVVVEKKIHECPVCFRVFASGQALGGHKRTHVIGSAATTTTATATATATVSVRTSARVGDSLIDLNLPAPVDDDDDVSQFDDSAVSDAEFVTL 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2526 317 MobiDBLite consensus disorder prediction 134 156 - -
Ssu4g2526 317 MobiDBLite consensus disorder prediction 1 40 - -
Ssu4g2526 317 Pfam C2H2-type zinc finger 188 213 - -
Ssu4g2526 317 Pfam C2H2-type zinc finger 233 255 - -
Ssu4g2526 317 MobiDBLite consensus disorder prediction 21 40 - -
Ssu4g2526 317 ProSitePatterns Zinc finger C2H2 type domain signature. 235 255 IPR013087 -
Ssu4g2526 317 ProSitePatterns Zinc finger C2H2 type domain signature. 191 211 IPR013087 -
Ssu4g2526 317 MobiDBLite consensus disorder prediction 134 186 - -
Ssu4g2526 317 MobiDBLite consensus disorder prediction 59 117 - -
Ssu4g2526 317 MobiDBLite consensus disorder prediction 157 172 - -
Ssu4g2526 317 Gene3D Classic Zinc Finger 186 255 - -
Ssu4g2526 317 MobiDBLite consensus disorder prediction 103 117 - -
Ssu4g2526 317 SUPERFAMILY beta-beta-alpha zinc fingers 188 255 IPR036236 -
Ssu4g2526 317 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 1 316 IPR044303 GO:0006355
Ssu4g2526 317 PANTHER CYS2/HIS2 ZINC-FINGER TRANSCRIPTION FACTOR 1 316 - -
Ssu4g2526 317 SMART c2h2final6 189 211 IPR013087 -
Ssu4g2526 317 SMART c2h2final6 233 255 IPR013087 -
Ssu4g2526 317 ProSiteProfiles Zinc finger C2H2 type domain profile. 189 216 IPR013087 -
Ssu4g2526 317 ProSiteProfiles Zinc finger C2H2 type domain profile. 233 255 IPR013087 -
Ssu4g2526 317 MobiDBLite consensus disorder prediction 70 89 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2526 Ssu-Chr4 63796714 63797667 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g2526 1 299 C2H2 Transcription Factor Family AT3G60580 41.905 5.33e-59 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Ssu4g2526 zf-C2H2_6 5.7e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2526 - - gmx:100776462 363.229
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g2526 4 63796714 63797667 Ssu4g2526 4 63796714 63797667 ECH